* using log directory 'd:/Rcompile/CRANpkg/seao.Rcheck' * using R version 2.1.1, 2005-06-16 * checking for file 'seao/DESCRIPTION' ... OK * this is package 'seao' version '0.2-1' * checking if this is a source package ... OK * checking whether package 'seao' can be installed ... OK * checking package directory ... OK * checking for portable file names ... OK * checking DESCRIPTION meta-information ... OK * checking package dependencies ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for syntax errors ... OK * checking R files for library.dynam ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking Rd files ... WARNING Rd files with likely Rd problems: Unaccounted top-level text in file 'd:/Rcompile/CRANpkg/seao/man/selectparents.Rd': Following section 'details': "\n\n For the selection itself, a roulette-like system is used. The chance\n that a certain numer is chosen is linear correlated " [truncated] Rd files without 'keyword': d:/Rcompile/CRANpkg/seao/man/chooseparents.Rd d:/Rcompile/CRANpkg/seao/man/crossover.Rd d:/Rcompile/CRANpkg/seao/man/genomestruc.Rd d:/Rcompile/CRANpkg/seao/man/mutation.Rd d:/Rcompile/CRANpkg/seao/man/newgen.Rd d:/Rcompile/CRANpkg/seao/man/nextgen.Rd d:/Rcompile/CRANpkg/seao/man/plotevolution.fit.Rd d:/Rcompile/CRANpkg/seao/man/plotevolution.gene.Rd d:/Rcompile/CRANpkg/seao/man/plotfreq.allele.Rd d:/Rcompile/CRANpkg/seao/man/seao.terminology.Rd d:/Rcompile/CRANpkg/seao/man/selectparents.Rd These entries are required in an Rd file. See chapter 'Writing R documentation files' in manual 'Writing R Extensions'. * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... WARNING Codoc mismatches from documentation object 'nextgen': nextgen Code: function(struc.ea, n.ind = 25, gen.parent = NULL, selection = list(base = "fit", rescale = 0), corate = 90, mutation = list(base = "unif", spread = 1, rate = 15)) Docs: function(struc.ea, n.ind = NULL, gen.parent = NULL, selection = list(base = "fit", rescale = 0), corate = 90, mutation = list(base = "unif", spread = 1, rate = 15)) * checking Rd \usage sections ... OK * creating seao-Ex.R ... OK * checking examples ... OK * creating seao-manual.tex ... OK * checking seao-manual.tex ... OK