* using log directory 'd:/Rcompile/CRANpkg/local/3.0/RobLoxBioC.Rcheck'
* using R version 3.0.1 (2013-05-16)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* checking for file 'RobLoxBioC/DESCRIPTION' ... OK
* this is package 'RobLoxBioC' version '0.8.3'
* package encoding: latin1
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'RobLoxBioC' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking examples ... OK
* checking differences from 'RobLoxBioC-Ex.Rout' to 'RobLoxBioC-Ex.Rout.save' ...
3,22d2
< Attaching package: 'BiocGenerics'
< 
< The following objects are masked from 'package:parallel':
< 
<     clusterApply, clusterApplyLB, clusterCall, clusterEvalQ,
<     clusterExport, clusterMap, parApply, parCapply, parLapply,
<     parLapplyLB, parRapply, parSapply, parSapplyLB
< 
< The following object is masked from 'package:stats':
< 
<     xtabs
< 
< The following objects are masked from 'package:base':
< 
<     Filter, Find, Map, Position, Reduce, anyDuplicated, as.data.frame,
<     cbind, colnames, duplicated, eval, get, intersect, lapply, mapply,
<     match, mget, order, paste, pmax, pmax.int, pmin, pmin.int, rank,
<     rbind, rep.int, rownames, sapply, setdiff, sort, table, tapply,
<     union, unique, unlist
< 
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<     Vignettes contain introductory material; view with
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>   Vignettes contain introductory material. To view, type
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<     'citation("Biobase")', and for packages 'citation("pkgname")'.
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>   'citation("Biobase")' and for packages 'citation("pkgname")'.
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< Welcome to beadarray version 2.10.0
---
> Welcome to beadarray version 2.4.1
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< :startupmsg>  Utilities for start-up messages (version 0.8)
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> :startupmsg>  Utilities for start-up messages (version 0.7.3)
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< :SweaveListingUtils>  0.6.1)
< :SweaveListingUtils> 
< :SweaveListingUtils>  NOTE: Support for this package
< :SweaveListingUtils>  will stop soon.
< :SweaveListingUtils> 
< :SweaveListingUtils>  Package 'knitr' is providing the
< :SweaveListingUtils>  same functionality in a better
< :SweaveListingUtils>  way.
---
> :SweaveListingUtils>  0.5.5)
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< The following object is masked from 'package:base':
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> The following object(s) are masked from 'package:base':
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< :distr>  2.4)
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> :distr>  2.3.4)
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< The following object is masked from 'package:stats':
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< :distrEx>  Extensions of package distr (version 2.4)
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> 
> Attaching package: 'evd'
> 
> The following object(s) are masked from 'package:lattice':
> 
>     qq
> 
> 
> Attaching package: 'actuar'
> 
> The following object(s) are masked from 'package:grDevices':
> 
>     cm
> 
> :distrEx>  Extensions of package distr (version 2.3.2)
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< :distrEx>  attached /before/ package "distrEx". See
< :distrEx>  distrExMASK().Note: Extreme value distribution
< :distrEx>  functionality has been moved to
< :distrEx> 
< :distrEx>        package "RobExtremes". See distrExMOVED().
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> :distrEx>  attached /before/ package "distrEx". See distrExMASK().
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< The following object is masked from 'package:stats':
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> The following object(s) are masked from 'package:stats':
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< :RandVar>  Implementation of random variables (version 0.9)
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> :RandVar>  Implementation of random variables (version 0.8.1)
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< :distrMod>  (version 2.4)
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> :distrMod>  (version 2.3.3)
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< The following object is masked from 'package:stats4':
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< The following object is masked from 'package:stats':
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< The following object is masked from 'package:base':
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> The following object(s) are masked from 'package:base':
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< The following object is masked from 'package:graphics':
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> The following object(s) are masked from 'package:graphics':
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< > base::assign(".oldSearch", base::search(), pos = 'CheckExEnv')
---
> > assign(".oldSearch", search(), pos = 'CheckExEnv')
356c339
<    2.73    0.21    2.95 
---
>   5.425   0.084   5.528 
 OK
* checking PDF version of manual ... OK