* using log directory 'd:/Rcompile/CRANpkg/local/2.4/ProbeR.Rcheck'
* using R version 2.4.1 beta (2006-12-07 r40137)
* checking for file 'ProbeR/DESCRIPTION' ... OK
* this is package 'ProbeR' version '2.0'
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'ProbeR' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for syntax errors ... OK
* checking R files for non-ASCII characters ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* creating ProbeR-Ex.R ... OK
* checking examples ... ERROR
Running examples in 'ProbeR-Ex.R' failed.
The error most likely occurred in:

> ### * probeR.parallel.plot
> 
> flush(stderr()); flush(stdout())
> 
> ### Name: probeR.parallel.plot
> ### Title: Parallel coordinate plot of summary value and probe level data
> ### Aliases: probeR.parallel.plot
> ### Keywords: models univar
> 
> ### ** Examples
> 
> library(affy)
> data(affybatch.example)
> eset<-expresso(affybatch.example,bg.correct=FALSE,normalize.method="quantiles",pmcorrect.method="pmonly",summary.method="medianpolish")
normalization: quantiles 
PM/MM correction : pmonly 
expression values: medianpolish 
normalizing...done.
150 ids to be processed
|                    |
|####################|
> data.summary<-exprs(eset)
> probe.norm<-normalize.AffyBatch.quantiles(affybatch.example,type="pmonly")
> data.probe<-log(probes(probe.norm),base=2)
> probeR.parallel.plot("D78156_at",data.summary,data.probe)
Error in axis(1, at = c(1:p), lab = as.character(xlab), cex = 0) : 
	invalid value specified for graphical parameter "cex"
Execution halted