* using log directory 'd:/Rcompile/CRANpkg/local/2.5/CoCo.Rcheck' * using R version 2.5.1 Patched (2007-08-01 r42387) * checking for file 'CoCo/DESCRIPTION' ... OK * looks like 'CoCo' is a package bundle * this is bundle 'CoCo' version '0.1.7.4' * checking package dependencies ... OK * checking if this is a source bundle ... OK * checking whether bundle 'CoCo' can be installed ... OK * checking 'CoCoGraph' in bundle 'CoCo' ** checking package directory ... OK ** checking for portable file names ... OK ** checking for file 'DESCRIPTION.in' ... OK ** checking DESCRIPTION meta-information ... OK ** checking top-level files ... OK ** checking index information ... OK ** checking package subdirectories ... OK ** checking R files for non-ASCII characters ... OK ** checking R files for syntax errors ... OK ** checking whether the package can be loaded ... OK ** checking whether the package can be loaded with stated dependencies ... OK ** checking whether the name space can be loaded with stated dependencies ... OK ** checking for unstated dependencies in R code ... WARNING 'library' or 'require' calls not declared from: CoCo MASS See the information on DESCRIPTION files in the chapter 'Creating R packages' of the 'Writing R Extensions' manual. ** checking S3 generic/method consistency ... OK ** checking replacement functions ... OK ** checking foreign function calls ... OK ** checking R code for possible problems ... OK ** checking Rd files ... OK ** checking Rd cross-references ... OK ** checking for missing documentation entries ... OK ** checking for code/documentation mismatches ... OK ** checking Rd \usage sections ... OK ** creating CoCoGraph-Ex.R ... OK ** checking examples ... OK ** creating CoCoGraph-manual.tex ... OK ** checking CoCoGraph-manual.tex ... OK * checking 'CoCoObjects' in bundle 'CoCo' ** checking package directory ... OK ** checking for portable file names ... OK ** checking for file 'DESCRIPTION.in' ... OK ** checking DESCRIPTION meta-information ... OK ** checking top-level files ... OK ** checking index information ... OK ** checking package subdirectories ... OK ** checking R files for non-ASCII characters ... OK ** checking R files for syntax errors ... OK ** checking whether the package can be loaded ... OK ** checking whether the package can be loaded with stated dependencies ... OK ** checking whether the name space can be loaded with stated dependencies ... OK ** checking for unstated dependencies in R code ... OK ** checking S3 generic/method consistency ... OK ** checking replacement functions ... OK ** checking foreign function calls ... OK ** checking R code for possible problems ... OK ** checking Rd files ... OK ** checking Rd cross-references ... OK ** checking for missing documentation entries ... OK ** checking for code/documentation mismatches ... OK ** checking Rd \usage sections ... OK ** creating CoCoObjects-Ex.R ... OK ** checking examples ... OK ** creating CoCoObjects-manual.tex ... OK ** checking CoCoObjects-manual.tex ... OK * checking 'CoCoCore' in bundle 'CoCo' ** checking package directory ... OK ** checking for portable file names ... OK ** checking for file 'DESCRIPTION.in' ... OK ** checking DESCRIPTION meta-information ... OK ** checking top-level files ... OK ** checking index information ... OK ** checking package subdirectories ... OK ** checking R files for non-ASCII characters ... OK ** checking R files for syntax errors ... OK ** checking whether the package can be loaded ... OK ** checking whether the package can be loaded with stated dependencies ... OK ** checking whether the name space can be loaded with stated dependencies ... OK ** checking for unstated dependencies in R code ... OK ** checking S3 generic/method consistency ... OK ** checking replacement functions ... OK ** checking foreign function calls ... OK ** checking R code for possible problems ... OK ** checking Rd files ... OK ** checking Rd cross-references ... OK ** checking for missing documentation entries ... OK ** checking for code/documentation mismatches ... OK ** checking Rd \usage sections ... OK ** checking for CRLF line endings in C/C++/Fortran sources/headers ... OK ** checking for portable compilation flags in Makevars ... OK ** checking for portable use of $BLAS_LIBS ... OK ** creating CoCoCore-Ex.R ... OK ** checking examples ... OK ** creating CoCoCore-manual.tex ... OK ** checking CoCoCore-manual.tex ... OK * checking 'CoCoOldData' in bundle 'CoCo' ** checking package directory ... OK ** checking for portable file names ... OK ** checking for file 'DESCRIPTION.in' ... OK ** checking DESCRIPTION meta-information ... OK ** checking top-level files ... OK ** checking index information ... OK ** checking package subdirectories ... OK ** checking R files for non-ASCII characters ... OK ** checking R files for syntax errors ... OK ** checking whether the package can be loaded ... OK ** checking whether the package can be loaded with stated dependencies ... OK ** checking whether the name space can be loaded with stated dependencies ... OK ** checking for unstated dependencies in R code ... OK ** checking S3 generic/method consistency ... OK ** checking replacement functions ... OK ** checking foreign function calls ... OK ** checking R code for possible problems ... OK ** checking Rd files ... OK ** checking Rd cross-references ... OK ** checking for missing documentation entries ... OK ** checking for code/documentation mismatches ... OK ** checking Rd \usage sections ... OK ** creating CoCoOldData-Ex.R ... OK ** checking examples ... OK ** creating CoCoOldData-manual.tex ... OK ** checking CoCoOldData-manual.tex ... OK * checking 'CoCoRaw' in bundle 'CoCo' ** checking package directory ... OK ** checking for portable file names ... OK ** checking for file 'DESCRIPTION.in' ... OK ** checking DESCRIPTION meta-information ... OK ** checking top-level files ... OK ** checking index information ... OK ** checking package subdirectories ... OK ** checking R files for non-ASCII characters ... OK ** checking R files for syntax errors ... OK ** checking whether the package can be loaded ... OK ** checking whether the package can be loaded with stated dependencies ... OK ** checking whether the name space can be loaded with stated dependencies ... OK ** checking for unstated dependencies in R code ... OK ** checking S3 generic/method consistency ... OK ** checking replacement functions ... OK ** checking foreign function calls ... OK ** checking R code for possible problems ... OK ** checking Rd files ... OK ** checking Rd cross-references ... OK ** checking for missing documentation entries ... OK ** checking for code/documentation mismatches ... OK ** checking Rd \usage sections ... OK ** creating CoCoRaw-Ex.R ... OK ** checking examples ... OK ** creating CoCoRaw-manual.tex ... OK ** checking CoCoRaw-manual.tex ... OK * checking 'CoCo' in bundle 'CoCo' ** checking package directory ... OK ** checking for portable file names ... OK ** checking for file 'DESCRIPTION.in' ... OK ** checking DESCRIPTION meta-information ... OK ** checking top-level files ... OK ** checking index information ... OK ** checking package subdirectories ... OK ** checking R files for non-ASCII characters ... OK ** checking R files for syntax errors ... OK ** checking whether the package can be loaded ... OK ** checking whether the package can be loaded with stated dependencies ... OK ** checking whether the name space can be loaded with stated dependencies ... OK ** checking for unstated dependencies in R code ... WARNING 'library' or 'require' calls not declared from: methods See the information on DESCRIPTION files in the chapter 'Creating R packages' of the 'Writing R Extensions' manual. ** checking S3 generic/method consistency ... OK ** checking replacement functions ... OK ** checking foreign function calls ... OK ** checking R code for possible problems ... OK ** checking Rd files ... OK ** checking Rd cross-references ... OK ** checking for missing documentation entries ... OK ** checking for code/documentation mismatches ... OK ** checking Rd \usage sections ... OK ** checking data for non-ASCII characters ... OK ** creating CoCo-Ex.R ... OK ** checking examples ... OK ** creating CoCo-manual.tex ... OK ** checking CoCo-manual.tex ... OK * checking 'CoCoCg' in bundle 'CoCo' ** checking package directory ... OK ** checking for portable file names ... OK ** checking for file 'DESCRIPTION.in' ... OK ** checking DESCRIPTION meta-information ... OK ** checking top-level files ... OK ** checking index information ... OK ** checking package subdirectories ... OK ** checking R files for non-ASCII characters ... OK ** checking R files for syntax errors ... OK ** checking whether the package can be loaded ... OK ** checking whether the package can be loaded with stated dependencies ... OK ** checking whether the name space can be loaded with stated dependencies ... OK ** checking for unstated dependencies in R code ... WARNING 'library' or 'require' calls not declared from: methods CoCo See the information on DESCRIPTION files in the chapter 'Creating R packages' of the 'Writing R Extensions' manual. ** checking S3 generic/method consistency ... OK ** checking replacement functions ... OK ** checking foreign function calls ... OK ** checking R code for possible problems ... OK ** checking Rd files ... OK ** checking Rd cross-references ... OK ** checking for missing documentation entries ... OK ** checking for code/documentation mismatches ... OK ** checking Rd \usage sections ... OK ** checking data for non-ASCII characters ... OK ** checking for CRLF line endings in C/C++/Fortran sources/headers ... OK ** checking for portable compilation flags in Makevars ... OK ** checking for portable use of $BLAS_LIBS ... OK ** creating CoCoCg-Ex.R ... OK ** checking examples ... OK ** creating CoCoCg-manual.tex ... OK ** checking CoCoCg-manual.tex ... OK