* using log directory 'd:/Rcompile/CRANpkg/local/2.5/ape.Rcheck'
* using R version 2.5.1 Patched (2007-08-01 r42387)
* checking for file 'ape/DESCRIPTION' ... OK
* this is package 'ape' version '2.0-2'
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'ape' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking data for non-ASCII characters ... OK
* checking for CRLF line endings in C/C++/Fortran sources/headers ... OK
* checking for portable compilation flags in Makevars ... OK
* checking for portable use of $BLAS_LIBS ... OK
* creating ape-Ex.R ... OK
* checking examples ... ERROR
Running examples in 'ape-Ex.R' failed.
The error most likely occurred in:

> ### * fastme
> 
> flush(stderr()); flush(stdout())
> 
> ### Name: FastME
> ### Title: Tree Estimation Based on the Minimum Evolution Algorithm
> ### Aliases: fastme fastme.bal fastme.ols
> ### Keywords: models
> 
> ### ** Examples
> 
> ### From Saitou and Nei (1987, Table 1):
> x <- c(7, 8, 11, 13, 16, 13, 17, 5, 8, 10, 13,
+        10, 14, 5, 7, 10, 7, 11, 8, 11, 8, 12,
+        5, 6, 10, 9, 13, 8)
> M <- matrix(0, 8, 8)
> M[row(M) > col(M)] <- x
> M[row(M) < col(M)] <- x
> rownames(M) <- colnames(M) <- 1:8
> tr <- fastme.bal(M)
Warning in as.double.default(tp[3]) : NAs introduced by coercion
> plot(tr, "u")
Error in as.vector(data) : unimplemented type 'character' in 'asReal'
Execution halted