* using log directory 'd:/Rcompile/CRANpkg/local/2.5/clac.Rcheck'
* using R version 2.5.1 (2007-06-27)
* checking for file 'clac/DESCRIPTION' ... OK
* this is package 'clac' version '0.1-2'
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'clac' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... WARNING
plot.allarray: no visible binding for global variable 'ch'
plot.allarray: no visible binding for global variable 'nucpos'
plot.allarray: no visible binding for global variable 'centro'
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking data for non-ASCII characters ... OK
* checking for CRLF line endings in C/C++/Fortran sources/headers ... OK
* checking for portable use of $BLAS_LIBS ... OK
* creating clac-Ex.R ... OK
* checking examples ... ERROR
Running examples in 'clac-Ex.R' failed.
The error most likely occurred in:

> ### * clac.PlotAllArray.R
> 
> flush(stderr()); flush(stdout())
> 
> ### Name: clac.PlotAllArray.R
> ### Title: A function to plot multiple arrays for CLAC result.
> ### Aliases: clac.PlotAllArray.R
> ### Keywords: cluster
> 
> ### ** Examples
> 
> library(clac)
> data(BACarray)
> attach(BACarray)
> 
> ############ prepare the normal reference arrays
> NormalResult<-clac.preparenormal.R(DiseaseArray, NormalArray, Normal.Type=rep(0,3), chromosome.number=chromosome, nucleotide.position=nucposition, windowsize=5, targetFDR=0.01, chromosomeOption=FALSE)
> 
> ############ clac on selected tumor arrays
> clac.result<-clac.tumorarray.R(NormalResult, tumorarrayIndex=1:4)
Error in cutree(temptree, h = 0.5) : INTEGER() can only be applied to a 'integer', not a 'builtin'
Execution halted