* using log directory 'd:/Rcompile/CRANpkg/local/2.6/FTICRMS.Rcheck' * using R version 2.6.2 (2008-02-08) * checking for file 'FTICRMS/DESCRIPTION' ... OK * checking extension type ... Package * this is package 'FTICRMS' version '0.5' * checking package dependencies ... OK * checking if this is a source package ... OK * checking whether package 'FTICRMS' can be installed ... OK * checking package directory ... OK * checking for portable file names ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking for unstated dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... NOTE display.test: no visible binding for global variable 'sigs' display.test: no visible binding for global variable 'clust.mat' display.test : : no visible binding for global variable 'clust.mat' display.test : : no visible binding for global variable 'parameter.list' run.analysis: no visible binding for global variable 'lrg.peaks' run.analysis: no visible binding for global variable 'amps' run.analysis: no visible binding for global variable 'centers' run.cluster.matrix: no visible binding for global variable 'amps' run.cluster.matrix: no visible binding for global variable 'centers' run.cluster.matrix : : no visible binding for global variable 'centers' * checking Rd files ... WARNING Rd files without 'keyword': baseline.Rd display.test.Rd extract.pars.Rd locate.peaks.Rd make.par.file.Rd run.all.Rd run.analysis.Rd run.baselines.Rd run.cluster.matrix.Rd run.lrg.peaks.Rd run.peaks.Rd run.strong.peaks.Rd These entries are required in an Rd file. See the chapter 'Writing R documentation files' in manual 'Writing R Extensions'. * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * creating FTICRMS-Ex.R ... OK * checking examples ... OK * creating FTICRMS-manual.tex ... OK * checking FTICRMS-manual.tex ... OK