* using log directory 'd:/Rcompile/CRANpkg/local/2.6/geoR.Rcheck' * using R version 2.6.2 (2008-02-08) * checking for file 'geoR/DESCRIPTION' ... OK * this is package 'geoR' version '1.6-21' * checking package dependencies ... OK * checking if this is a source package ... OK * checking whether package 'geoR' can be installed ... OK * checking package directory ... OK * checking for portable file names ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking for unstated dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... NOTE .ksline.aux.1: no visible binding for global variable 'm0win' .loss.vario: no visible binding for '<<-' assignment to '.temp.theta' .negloglik.GRF: no visible binding for global variable '.likGRF.dists.vec' .negloglik.GRF: no visible binding for global variable 'xivy' .nlmP: no visible binding for '<<-' assignment to 'madtonormalQQ' .nlmP : : no visible binding for global variable '.ind.prof.phi' .nlmP : newobjfunc: no visible global function definition for 'madtonormalQQ' .nlmP : newobjfunc: no visible global function definition for '.objfuncQQ' .nlmP: no visible global function definition for 'madtonormalQQ' .proflik.aux0: no visible binding for global variable '.temp.list' .proflik.aux0: no visible binding for '<<-' assignment to '.temp.list' .proflik.aux1: no visible binding for global variable '.temp.list' .proflik.aux1.1: no visible binding for global variable '.temp.list' .proflik.aux10: no visible binding for global variable '.temp.list' .proflik.aux11: no visible binding for '<<-' assignment to '.temp.list' .proflik.aux11: no visible binding for global variable '.temp.list' .proflik.aux12: no visible binding for global variable '.temp.list' .proflik.aux13: no visible binding for '<<-' assignment to '.temp.list' .proflik.aux13: no visible binding for global variable '.temp.list' .proflik.aux14: no visible binding for global variable '.temp.list' .proflik.aux15: no visible binding for '<<-' assignment to '.temp.list' .proflik.aux15: no visible binding for global variable '.temp.list' .proflik.aux16: no visible binding for global variable '.temp.list' .proflik.aux17: no visible binding for '<<-' assignment to '.temp.list' .proflik.aux17: no visible binding for global variable '.temp.list' .proflik.aux18: no visible binding for global variable '.temp.list' .proflik.aux19: no visible binding for '<<-' assignment to '.temp.list' .proflik.aux19: no visible binding for global variable '.temp.list' .proflik.aux2: no visible binding for '<<-' assignment to '.temp.list' .proflik.aux2: no visible binding for global variable '.temp.list' .proflik.aux20: no visible binding for global variable '.temp.list' .proflik.aux21: no visible binding for global variable '.temp.list' .proflik.aux21.1: no visible binding for global variable '.temp.list' .proflik.aux22: no visible binding for global variable '.temp.list' .proflik.aux23: no visible binding for global variable '.temp.temp.list' .proflik.aux23: no visible binding for global variable '.temp.list' .proflik.aux23: no visible binding for '<<-' assignment to '.temp.list' .proflik.aux24: no visible binding for '<<-' assignment to '.temp.list' .proflik.aux24: no visible binding for global variable '.temp.list' .proflik.aux27: no visible binding for '<<-' assignment to '.temp.list' .proflik.aux27: no visible binding for global variable '.temp.list' .proflik.aux28: no visible binding for '<<-' assignment to '.temp.list' .proflik.aux28: no visible binding for global variable '.temp.list' .proflik.aux3: no visible binding for global variable '.temp.list' .proflik.aux30: no visible binding for global variable '.temp.list' .proflik.aux30: no visible binding for '<<-' assignment to '.temp.list' .proflik.aux32: no visible binding for '<<-' assignment to '.temp.list' .proflik.aux32: no visible binding for global variable '.temp.list' .proflik.aux33: no visible binding for '<<-' assignment to '.temp.list' .proflik.aux33: no visible binding for global variable '.temp.list' .proflik.aux4: no visible binding for global variable '.temp.list' .proflik.aux4: no visible binding for global variable 'choldet' .proflik.aux5: no visible binding for '<<-' assignment to '.temp.list' .proflik.aux5: no visible binding for global variable '.temp.list' .proflik.aux6: no visible binding for global variable '.temp.list' .proflik.aux7: no visible binding for '<<-' assignment to '.temp.list' .proflik.aux7: no visible binding for global variable '.temp.list' .proflik.aux8: no visible binding for global variable '.temp.list' .proflik.aux9: no visible binding for '<<-' assignment to '.temp.list' .proflik.aux9: no visible binding for global variable '.temp.list' .proflik.ftau: no visible binding for global variable '.temp.list' .proflik.ftau: no visible binding for global variable '.temp.lower' .proflik.ftau: no visible binding for global variable '.temp.lower.lambda' .proflik.ftau: no visible binding for global variable '.temp.upper.lambda' .proflik.ftau: no visible binding for '<<-' assignment to '.temp.list' .proflik.lambda: no visible binding for global variable '.temp.lower.lambda' .proflik.lambda: no visible binding for global variable '.temp.upper.lambda' .proflik.main: no visible binding for global variable '.temp.list' .proflik.nug: no visible binding for global variable '.temp.list' .proflik.nug: no visible binding for global variable '.temp.lower' .proflik.nug: no visible binding for global variable '.temp.lower.lambda' .proflik.nug: no visible binding for global variable '.temp.upper.lambda' .proflik.nug: no visible binding for '<<-' assignment to '.temp.list' .proflik.phi: no visible binding for global variable '.temp.list' .proflik.phi: no visible binding for global variable '.temp.lower.phi' .proflik.phi: no visible binding for global variable 'phi.lambda' .proflik.phi: no visible binding for global variable '.temp.lower.lambda' .proflik.phi: no visible binding for global variable '.temp.upper.lambda' .proflik.phi: no visible binding for '<<-' assignment to '.temp.list' as.geodata.SpatialPointsDataFrame: no visible binding for global variable 'coords.col' boot.variofit: no visible binding for '<<-' assignment to '.IND.geoR.variog.model.env' cov.spatial: no visible binding for global variable 'ns' cov.spatial: no visible binding for global variable 'phi' cov.spatial: no visible binding for global variable 'sigmasq' grf: no visible binding for '<<-' assignment to 'setRF' grf: no visible binding for global variable 'setRF' likfit: no visible binding for '<<-' assignment to '.likGRF.dists.vec' likfit: no visible binding for global variable '.likGRF.dists.vec' likfit.nospatial: no visible binding for global variable 'proflik.lambda' likfit.nospatial: no visible binding for global variable '.temp.lambda' likfit.nospatial: no visible binding for global variable '.temp.lower.lambda' likfit.nospatial: no visible binding for global variable '.temp.upper.lambda' likfit.nospatial: no visible global function definition for 'nlmP' likfit.old: no visible binding for '<<-' assignment to '.temp.list' likfit.old: no visible binding for global variable '.temp.list' likfit.old: no visible binding for global variable '.temp.sill' likfit.old: no visible binding for global variable '.temp.phi' likfit.old: no visible binding for global variable '.temp.lower' likfit.old: no visible binding for global variable '.temp.lambda' likfit.old: no visible binding for global variable '.temp.lower.lambda' likfit.old: no visible binding for global variable '.temp.upper.lambda' likfit.old: no visible binding for global variable '.temp.nugget' likfit.old: no visible binding for global variable '.temp.lower.phi' proflik: no visible binding for '<<-' assignment to '.temp.list' proflik: no visible binding for global variable '.temp.list' proflik: no visible binding for '<<-' assignment to '.temp.temp.list' proflik: no visible binding for global variable '.temp.temp.list' proflik: no visible binding for global variable 'sigmasqlambda.values' sample.prior: no visible binding for global variable 'tausq.discrete' variog4: no visible binding for '<<-' assignment to '.variog4.nomessage' * checking Rd files ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking data for non-ASCII characters ... OK * checking line endings in C/C++/Fortran sources/headers ... OK * checking line endings in Makefiles ... OK * checking for portable use of $BLAS_LIBS ... OK * creating geoR-Ex.R ... OK * checking examples ... OK * creating geoR-manual.tex ... OK * checking geoR-manual.tex ... OK