* using log directory 'd:/Rcompile/CRANpkg/local/2.6/gss.Rcheck' * using R version 2.6.2 (2008-02-08) * checking for file 'gss/DESCRIPTION' ... OK * this is package 'gss' version '1.0-0' * checking package dependencies ... OK * checking if this is a source package ... OK * checking whether package 'gss' can be installed ... OK * checking package directory ... OK * checking for portable file names ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking for unstated dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... NOTE mkterm: multiple local function definitions for 'phi.fun' with different formal arguments mkterm: multiple local function definitions for 'rk.fun' with different formal arguments proj0.Gamma: no visible binding for global variable 'y' residuals.gssanova: no visible binding for global variable 'nu' * checking Rd files ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... NOTE S3 methods shown with full name in documentation object 'fitted.ssanova': fitted.ssanova residuals.ssanova fitted.gssanova residuals.gssanova S3 methods shown with full name in documentation object 'predict.ssanova': predict.ssanova predict.ssanova0 S3 methods shown with full name in documentation object 'print': print.ssanova print.ssanova0 print.gssanova print.ssden print.sshzd print.summary.ssanova print.summary.gssanova print.summary.gssanova0 S3 methods shown with full name in documentation object 'project': project.ssanova project.gssanova project.ssden project.sshzd S3 methods shown with full name in documentation object 'summary.gssanova': summary.gssanova S3 methods shown with full name in documentation object 'summary.gssanova0': summary.gssanova0 S3 methods shown with full name in documentation object 'summary.ssanova': summary.ssanova summary.ssanova0 The \usage entries for S3 methods should use the \method markup and not their full name. See the chapter 'Writing R documentation files' in manual 'Writing R Extensions'. * checking data for non-ASCII characters ... OK * checking line endings in C/C++/Fortran sources/headers ... OK * checking line endings in Makefiles ... OK * checking for portable compilation flags in Makevars ... OK * checking for portable use of $BLAS_LIBS ... OK * creating gss-Ex.R ... OK * checking examples ... OK * creating gss-manual.tex ... OK * checking gss-manual.tex ... OK