* using log directory 'd:/Rcompile/CRANpkg/local/2.6/ibdreg.Rcheck'
* using R version 2.6.2 RC (2008-02-04 r44320)
* checking for file 'ibdreg/DESCRIPTION' ... OK
* this is package 'ibdreg' version '0.1.1'
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'ibdreg' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
sim.ibd.var: no visible global function definition for 'resources'
sr.strsplit: no visible binding for global variable 'splitString'
Found possibly global 'T' or 'F' in the following functions:
  create.ibd.dat ibd.df.merlin mergeIBD
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... NOTE
S3 methods shown with full name in documentation object 'plot.ibdreg':
  plot.ibdreg

S3 methods shown with full name in documentation object 'plot.ibdreg.unexpect':
  plot.ibdreg.unexpect

S3 methods shown with full name in documentation object 'plot.linkage.all':
  plot.linkage.all

S3 methods shown with full name in documentation object 'plot.linkage.tests':
  plot.linkage.tests

S3 methods shown with full name in documentation object 'print.ibd.var':
  print.ibd.var

S3 methods shown with full name in documentation object 'print.ibdreg':
  print.ibdreg

S3 methods shown with full name in documentation object 'print.linkage.all':
  print.linkage.all

S3 methods shown with full name in documentation object 'print.linkage.tests':
  print.linkage.tests

The \usage entries for S3 methods should use the \method markup and not
their full name.
See the chapter 'Writing R documentation files' in manual 'Writing R
Extensions'.
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking for portable use of $BLAS_LIBS ... OK
* creating ibdreg-Ex.R ... OK
* checking examples ... OK
* creating ibdreg-manual.tex ... OK
* checking ibdreg-manual.tex ... OK