* using log directory 'd:/Rcompile/CRANpkg/local/2.6/zicounts.Rcheck' * using R version 2.6.2 RC (2008-02-04 r44320) * checking for file 'zicounts/DESCRIPTION' ... OK * this is package 'zicounts' version '1.1.5' * checking package dependencies ... OK * checking if this is a source package ... OK * checking whether package 'zicounts' can be installed ... OK * checking package directory ... OK * checking for portable file names ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking for unstated dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... NOTE zicensor: multiple local function definitions for 'grad.like' with different formal arguments zicensor: multiple local function definitions for 'neg.like' with different formal arguments zicounts: multiple local function definitions for 'neg.grad' with different formal arguments zicounts: multiple local function definitions for 'neg.like' with different formal arguments * checking Rd files ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... WARNING Bad \usage lines found in documentation object 'ezinb': ezinb((coeff = NULL, resp = y ~ ., upper = r ~ ., x = ~ 1, z = ~ 1, data=NULL, sub = NULL) Functions with \usage entries need to have the appropriate \alias entries, and all their arguments documented. The \usage entries must correspond to syntactically valid R code. See the chapter 'Writing R documentation files' in manual 'Writing R Extensions'. S3 methods shown with full name in documentation object 'summary.zinb': print.zinb summary.zinb print.czinb summary.czinb The \usage entries for S3 methods should use the \method markup and not their full name. See the chapter 'Writing R documentation files' in manual 'Writing R Extensions'. * checking data for non-ASCII characters ... OK * checking line endings in C/C++/Fortran sources/headers ... OK * checking line endings in Makefiles ... OK * checking for portable use of $BLAS_LIBS ... OK * creating zicounts-Ex.R ... OK * checking examples ... OK * creating zicounts-manual.tex ... OK * checking zicounts-manual.tex ... OK