* using log directory 'd:/Rcompile/CRANpkg/local/2.7/PBSmodelling.Rcheck' * using R version 2.7.2 (2008-08-25) * using session charset: ISO8859-1 * checking for file 'PBSmodelling/DESCRIPTION' ... OK * this is package 'PBSmodelling' version '2.01' * checking package name space information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking whether package 'PBSmodelling' can be installed ... OK * checking package directory ... OK * checking for portable file names ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the name space can be loaded with stated dependencies ... OK * checking for unstated dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... NOTE .CGUIback: no visible binding for global variable 'atEnd' .CGUIback: no visible binding for global variable 'talktab' .CGUIchooseSection: no visible binding for global variable 'talks' .CGUIchooseSection: no visible binding for global variable 'tn' .CGUIgo: no visible binding for global variable 'sn' .CGUIgo: no visible binding for global variable 'talks' .CGUIgo: no visible binding for global variable 'tn' .CGUIgo: no visible binding for global variable 'cn' .CGUIgo: no visible binding for global variable 'talktab' .createWidget: no visible binding for global variable 'tkWidget' .createWidget.slideplus : saveSlideBounds: no visible binding for '<<-' assignment to 'minVal' .createWidget.slideplus : saveSlideBounds: no visible binding for '<<-' assignment to 'curVal' .createWidget.slideplus : saveSlideBounds: no visible binding for '<<-' assignment to 'maxVal' .createWidget.slideplus : saveSlideBounds: no visible binding for global variable 'minVal' .createWidget.slideplus : saveSlideBounds: no visible binding for global variable 'curVal' .createWidget.slideplus : saveSlideBounds: no visible binding for global variable 'maxVal' .dClose: no visible binding for global variable '.dwd' .dClose: no visible binding for global variable '.dls' .getPrefix: no visible binding for global variable 'prefix' .loadCRunComparison: no visible binding for global variable 'runs' .makeTCGUI: no visible binding for global variable 'talks' .makeTCGUI: no visible binding for global variable 'fileList' .makeTCGUI: no visible binding for global variable 'buttonList' .openFilesFromGUI: no visible binding for global variable 'fileList' .openFilesFromGUI: no visible binding for global variable 'tn' .parseTalk: no visible global function definition for 'error' .parseTalk: no visible binding for global variable 'tagType' .parseTalk: no visible binding for global variable 'opts' .runChunk: no visible binding for global variable 'tn' .runChunk: no visible binding for global variable 'talks' .runTalk: no visible binding for global variable 'tn' .runTalk: no visible binding for global variable 'talks' .sortHelperActive: no visible binding for global variable 'PBS.history' .sortHelperActive: no visible binding for '<<-' assignment to 'PBS.history' .updateHistory: no visible binding for global variable 'PBS.history' addHistory: no visible binding for global variable 'PBS.history' addHistory: no visible binding for '<<-' assignment to 'PBS.history' backHistory: no visible binding for global variable 'PBS.history' backHistory: no visible binding for '<<-' assignment to 'PBS.history' calcMin : Sfun: no visible binding for '<<-' assignment to 'PBSmin' calcMin : Sfun: no visible binding for global variable 'PBSmin' calcMin: no visible binding for '<<-' assignment to 'PBSmin' calcMin: no visible binding for global variable 'PBSmin' clearHistory: no visible binding for global variable 'PBS.history' clearHistory: no visible binding for '<<-' assignment to 'PBS.history' createWin: no visible binding for global variable 'PBS.history' createWin: no visible binding for '<<-' assignment to 'PBS.history' exportHistory: no visible binding for global variable 'PBS.history' firstHistory: no visible binding for global variable 'PBS.history' forwHistory: no visible binding for global variable 'PBS.history' forwHistory: no visible binding for '<<-' assignment to 'PBS.history' getChoice: no visible binding for global variable 'blist' importHistory: no visible binding for global variable 'PBS.history' importHistory: no visible binding for '<<-' assignment to 'PBS.history' jumpHistory: no visible binding for global variable 'PBS.history' jumpHistory: no visible binding for '<<-' assignment to 'PBS.history' lastHistory: no visible binding for global variable 'PBS.history' presentTalk: no visible binding for global variable 'talks' presentTalk: no visible binding for global variable 'tn' rmHistory: no visible binding for global variable 'PBS.history' rmHistory: no visible binding for '<<-' assignment to 'PBS.history' runDemos: no visible binding for '<<-' assignment to '.dwd' runDemos: no visible binding for '<<-' assignment to '.dls' runDemos: no visible binding for '<<-' assignment to 'xxy' runDemos: no visible binding for '<<-' assignment to 'xx' runExamples: no visible binding for '<<-' assignment to '.runExHelper' runExamples : : no visible global function definition for '.runExHelperQuit' runExamples: no visible binding for '<<-' assignment to '.runExHelperQuit' runExamples : : no visible binding for global variable '.cwd' runExamples : : no visible binding for global variable '.cls' runExamples: no visible binding for '<<-' assignment to '.cls' runExamples: no visible binding for '<<-' assignment to '.cwd' showVignettes: no visible binding for '<<-' assignment to '.dwd' showVignettes: no visible binding for '<<-' assignment to '.dls' showVignettes: no visible binding for '<<-' assignment to 'xxy' showVignettes: no visible binding for '<<-' assignment to 'xx' sortHistory: no visible binding for global variable 'PBS.history' testWidgets: no visible binding for '<<-' assignment to '.testWidHelper' testWidgets : : no visible binding for global variable 'wN' * checking Rd files ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking data for non-ASCII characters ... OK * checking line endings in C/C++/Fortran sources/headers ... OK * checking line endings in Makefiles ... OK * checking for portable use of $BLAS_LIBS ... OK * creating PBSmodelling-Ex.R ... OK * checking examples ... OK * checking package vignettes in 'inst/doc' ... OK * creating PBSmodelling-manual.tex ... OK * checking PBSmodelling-manual.tex using pdflatex ... OK