* using log directory 'd:/Rcompile/CRANpkg/local/2.7/VGAM.Rcheck' * using R version 2.7.2 RC (2008-08-18 r46382) * using session charset: ISO8859-1 * checking for file 'VGAM/DESCRIPTION' ... OK * this is package 'VGAM' version '0.7-7' * checking package name space information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking whether package 'VGAM' can be installed ... OK * checking package directory ... OK * checking for portable file names ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the name space can be loaded with stated dependencies ... OK * checking for unstated dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... NOTE Coef.qrrvglm: no visible binding for global variable 'optimum' Coef.qrrvglm: no visible binding for global variable 'Darray' Coef.qrrvglm: no visible binding for global variable 'Tolerance' callcaof: no visible binding for '<<-' assignment to '.VGAM.CAO.cmatrix' callcqof: no visible binding for '<<-' assignment to '.VGAM.CQO.cmatrix' callcqof: no visible binding for '<<-' assignment to '.VGAM.CQO.ocmatrix' calldcaof: no visible binding for global variable '.VGAM.CAO.etamat' calldcaof: no visible binding for global variable '.VGAM.CAO.beta' calldcaof: no visible binding for global variable 'p1' calldcaof: no visible binding for global variable 'U' calldcaof: no visible binding for global variable 'queue' calldcaof: no visible binding for global variable 'qbig' calldcaof: no visible binding for global variable 'spar2' calldcaof: no visible binding for global variable 'df2.nl' calldcaof: no visible binding for '<<-' assignment to '.VGAM.CAO.etamat' calldcaof: no visible binding for '<<-' assignment to '.VGAM.CAO.z' calldcaof: no visible binding for '<<-' assignment to '.VGAM.CAO.U' cao.fit: no visible binding for global variable 'maxitl' cao.fit: no visible binding for global variable 'fv' cqo.fit: no visible binding for global variable 'modelno' cqo.fit: no visible binding for global variable 'quasi.newton' cqo.fit: no visible binding for global variable 'NOS' cqo.fit: no visible binding for global variable 'z' cqo.fit: no visible binding for global variable 'fv' loglinb3 : : no visible binding for global variable 'u3' loglinb3 : : no visible binding for global variable 'u2' loglinb3 : : no visible binding for global variable 'u23' loglinb3 : : no visible binding for global variable 'u1' loglinb3 : : no visible binding for global variable 'u13' loglinb3 : : no visible binding for global variable 'u12' loglinb3 : : no visible binding for global variable 'denom' mbino: no visible binding for global variable 'mvar' mbino: no visible binding for global variable 'smallno' preplotvgam: no visible global function definition for 'v.labels.lm' preplotvgam: no visible global function definition for 'terms.inner' rrr.derivC.rss: no visible binding for '<<-' assignment to '.VGAM.dot.counter' rrr.derivC.rss: no visible binding for global variable '.VGAM.dot.counter' rrvglm.fit: no visible binding for global variable 'modelno' rrvglm.fit: no visible binding for global variable 'fv' rrvglm.fit: no visible binding for global variable 'one.more' rrvglm.fit: no visible binding for global variable 'rrr.expression' uqo.fit: no visible binding for global variable 'CQO.FastAlgorithm' vgam: no visible binding for global variable 'Y' vgam.fit: no visible binding for global variable 'fv' vglm: no visible binding for global variable 'Y' vglm.fit: no visible binding for global variable 'fv' vlm.wfit: no visible global function definition for 'lm.fit.qr' * checking Rd files ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking data for non-ASCII characters ... OK * checking line endings in C/C++/Fortran sources/headers ... OK * checking line endings in Makefiles ... OK * checking for portable use of $BLAS_LIBS ... OK * creating VGAM-Ex.R ... OK * checking examples ... OK * creating VGAM-manual.tex ... OK * checking VGAM-manual.tex using pdflatex ... OK