* using log directory 'd:/Rcompile/CRANpkg/local/2.7/asuR.Rcheck' * using R version 2.7.2 RC (2008-08-18 r46382) * using session charset: ISO8859-1 * checking for file 'asuR/DESCRIPTION' ... OK * checking extension type ... Package * this is package 'asuR' version '0.08-24' * checking package dependencies ... OK * checking if this is a source package ... OK * checking whether package 'asuR' can be installed ... OK * checking package directory ... OK * checking for portable file names ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking for unstated dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... NOTE dep.glm: no visible binding for global variable 'my.data' lep.glm: no visible binding for global variable 'response.values' lep.glm: no visible binding for global variable 'my.data' nep.lmer: no visible binding for global variable 'my.data' nrp.lmer: no visible binding for global variable 'fixed.terms.factor' nrp.lmer: no visible binding for global variable 'my.data' parseFormula.glm: no visible binding for '<<-' assignment to 'response.var' parseFormula.glm: no visible binding for '<<-' assignment to 'response.term' parseFormula.glm: no visible binding for '<<-' assignment to 'predict.vars.numeric' parseFormula.glm: no visible binding for '<<-' assignment to 'predict.terms.numeric' parseFormula.glm: no visible binding for '<<-' assignment to 'index_coef.terms.numeric' parseFormula.glm: no visible binding for global variable 'predict.terms.numeric' parseFormula.glm: no visible binding for '<<-' assignment to 'my.data' parseFormula.glm: no visible binding for global variable 'response.var' parseFormula.glm: no visible binding for '<<-' assignment to 'intercept.logical' parseFormula.lm: no visible binding for '<<-' assignment to 'terms.numeric' parseFormula.lm: no visible binding for '<<-' assignment to 'response.var' parseFormula.lm: no visible binding for '<<-' assignment to 'response.term' parseFormula.lm: no visible binding for '<<-' assignment to 'predict.vars.numeric' parseFormula.lm: no visible binding for '<<-' assignment to 'predict.terms.numeric' parseFormula.lm: no visible binding for global variable 'terms.numeric' parseFormula.lm: no visible binding for '<<-' assignment to 'my.data.glm' parseFormula.lm: no visible binding for global variable 'response.var' parseFormula.lm: no visible binding for '<<-' assignment to 'intercept.logical' parseFormula.lmer: no visible binding for '<<-' assignment to 'intercept.logical' parseFormula.lmer: no visible binding for '<<-' assignment to 'group.vars' parseFormula.lmer: no visible binding for '<<-' assignment to 'effect.vars' parseFormula.lmer: no visible binding for '<<-' assignment to 'fixed.terms.numeric' parseFormula.lmer: no visible binding for '<<-' assignment to 'fixed.terms.factor' rfp.lmer: no visible binding for global variable 'my.data' rfp.lmer: no visible binding for global variable 'fixed.terms.factor' rgp.lmer: no visible binding for global variable 'my.data' rgp.lmer: no visible binding for global variable 'rand.vars' rpp.glm: no visible binding for global variable 'my.data' rpp.glm: no visible binding for global variable 'predict.terms.numeric' rpp.glm: no visible binding for global variable 'response.values' rpp.lm: no visible binding for global variable 'predict.vars.numeric' rpp.lm: no visible binding for global variable 'response.values.lm' * checking Rd files ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking data for non-ASCII characters ... OK * creating asuR-Ex.R ... OK * checking examples ... OK * checking package vignettes in 'inst/doc' ... OK * creating asuR-manual.tex ... OK * checking asuR-manual.tex using pdflatex ... OK