* using log directory 'd:/Rcompile/CRANpkg/local/2.7/clusterfly.Rcheck'
* using R version 2.7.2 RC (2008-08-18 r46382)
* using session charset: ISO8859-1
* checking for file 'clusterfly/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'clusterfly' version '0.2.2'
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'clusterfly' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
addhull: no visible global function definition for 'setEdges'
cfly_dist: no visible binding for global variable 'value'
qhull: no visible binding for global variable 'i'
qhull: no visible binding for global variable 'j'
xtable.table: no visible global function definition for 'xtable.matrix'
* checking Rd files ... WARNING
Rd files without 'description':
  get--set--clusterfly-r9.rd
  o.rd
These entries are required in an Rd file.

See the chapter 'Writing R documentation files' in manual 'Writing R
Extensions'.
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... NOTE
S3 methods shown with full name in documentation object 'as.data.frame.clusterfly':
  as.data.frame.clusterfly

S3 methods shown with full name in documentation object 'cut.hierfly':
  cut.hierfly

S3 methods shown with full name in documentation object '"[[<-.clusterfly"':
  [[<-.clusterfly

S3 methods shown with full name in documentation object 'ggobi.hierfly':
  ggobi.hierfly

S3 methods shown with full name in documentation object 'ggobi.som':
  ggobi.som

S3 methods shown with full name in documentation object 'print.clusterfly':
  print.clusterfly

S3 methods shown with full name in documentation object 'print.hierfly':
  print.hierfly

The \usage entries for S3 methods should use the \method markup and not
their full name.
See the chapter 'Writing R documentation files' in manual 'Writing R
Extensions'.
* checking data for non-ASCII characters ... OK
* creating clusterfly-Ex.R ... OK
* checking examples ... OK
* creating clusterfly-manual.tex ... OK
* checking clusterfly-manual.tex using pdflatex ... OK