* using log directory 'd:/Rcompile/CRANpkg/local/2.7/maanova.Rcheck'
* using R version 2.7.2 RC (2008-08-18 r46382)
* using session charset: ISO8859-1
* checking for file 'maanova/DESCRIPTION' ... OK
* this is package 'maanova' version '1.4.1'
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'maanova' can be installed ... WARNING
Found the following significant warnings:
  masvd.c:30: warning: assignment discards qualifiers from pointer target type
See 'd:/Rcompile/CRANpkg/local/2.7/maanova.Rcheck/00install.out' for details.
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
exprSet2Rawdata: no visible global function definition for 'exprs'
exprSet2Rawdata: no visible global function definition for 'geneNames'
exprSet2Rawdata: no visible global function definition for 'pData'
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... NOTE
S3 methods shown with full name in documentation object 'maanova-internal':
  plot.consensus.hc plot.consensus.kmean

The \usage entries for S3 methods should use the \method markup and not
their full name.
See the chapter 'Writing R documentation files' in manual 'Writing R
Extensions'.
* checking data for non-ASCII characters ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... WARNING
Found the following Makefiles with CR or CRLF line endings:
  src/Makefile
Some Unix makes require LF line endings.
* checking for portable use of $BLAS_LIBS ... OK
* creating maanova-Ex.R ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... OK
* creating maanova-manual.tex ... OK
* checking maanova-manual.tex using pdflatex ... OK