* using log directory 'd:/Rcompile/CRANpkg/local/2.7/noia.Rcheck'
* using R version 2.7.2 RC (2008-08-18 r46382)
* using session charset: ISO8859-1
* checking for file 'noia/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'noia' version '0.92'
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'noia' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
effNames: no visible binding for global variable 'effectsNames'
effectsNamesGeneral: no visible binding for global variable
  'effectsNames'
effectsNamesMultilinear: no visible binding for global variable
  'effectsNames'
formulaMultilinear: no visible binding for global variable
  'effectsNames'
gen2genZ: no visible binding for global variable 'genotypesNames'
genNames: no visible binding for global variable 'genotypesNames'
genNamesAppend: no visible binding for global variable 'genotypesNames'
genZ2ZS: no visible binding for global variable 'effectsNames'
genZ2ZS: no visible binding for global variable 'genotypesNames'
partialX: no visible binding for global variable 'effectsNames'
reconstructLinearEffects: no visible binding for global variable
  'effectsNames'
startingValuesLinear: no visible binding for global variable
  'effectsNames'
startingValuesMultilinear: no visible binding for global variable
  'effectsNames'
statusMaxDom: no visible binding for global variable 'effectsNames'
statusMaxLevel: no visible binding for global variable 'effectsNames'
varianceDecomposition: no visible binding for global variable
  'effectsNames'
* checking Rd files ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... NOTE
S3 methods shown with full name in documentation object 'print.noia':
  print.noia.linear print.noia.multilinear print.noia.common

The \usage entries for S3 methods should use the \method markup and not
their full name.
See the chapter 'Writing R documentation files' in manual 'Writing R
Extensions'.
* checking data for non-ASCII characters ... OK
* creating noia-Ex.R ... OK
* checking examples ... OK
* creating noia-manual.tex ... OK
* checking noia-manual.tex using pdflatex ... OK