* using log directory 'd:/Rcompile/CRANpkg/local/2.8/caret.Rcheck' * using R version 2.8.1 (2008-12-22) * using session charset: ISO8859-1 * checking for file 'caret/DESCRIPTION' ... OK * this is package 'caret' version '4.18' * checking package name space information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking whether package 'caret' can be installed ... OK * checking package directory ... OK * checking for portable file names ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the name space can be loaded with stated dependencies ... OK * checking for unstated dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... NOTE createModel: no visible global function definition for 'randomForestNWS' createModel: no visible global function definition for 'rfLSF' createModel: no visible global function definition for '.jcache' plot.rfe: no visible binding for global variable 'Selected' predictionFunction: possible error in attributes(modelFit, "model"): unused argument(s) ("model") predictors.gbm: no visible binding for global variable 'rel.inf' predictors.sda: no visible binding for global variable 'varIndex' predictors.smda: no visible binding for global variable 'varIndex' tuneScheme: no visible binding for global variable '.alpha' tuneScheme: no visible binding for global variable '.phi' tuneScheme: no visible binding for global variable '.lambda' * checking Rd files ... WARNING Rd files with unknown sections: classDist.Rd: Rdversion lattice.rfe.Rd: Rdversion See the chapter 'Writing R documentation files' in manual 'Writing R Extensions'. * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking data for non-ASCII characters ... OK * checking line endings in C/C++/Fortran sources/headers ... OK * checking line endings in Makefiles ... OK * checking for portable use of $BLAS_LIBS ... OK * creating caret-Ex.R ... OK * checking examples ... OK * checking package vignettes in 'inst/doc' ... WARNING *** Source Errors *** File d:/Rcompile/CRANpkg/local/2.8/caret.Rcheck/inst/doc/rfeExamples.R : unexpected ',' at 187: type = c("g", "p", "l"), 188: ylab = expression(100 *(best - RMSE)/best)), * creating caret-manual.tex ... OK * checking caret-manual.tex using pdflatex ... OK