* using log directory 'd:/Rcompile/CRANpkg/local/2.8/digeR.Rcheck'
* using R version 2.8.1 (2008-12-22)
* using session charset: ISO8859-1
* checking for file 'digeR/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'digeR' version '1.0'
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'digeR' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
digeR : whole.class : <anonymous>: no visible binding for global
  variable 'feature'
digeR : gwtCor : <anonymous>: no visible binding for global variable
  'feature'
* checking Rd files ... WARNING
Rd files with unknown sections:
  digeR-package.Rd: Rdversion
  digeR.Rd: Rdversion
  prostate.Rd: Rdversion

See the chapter 'Writing R documentation files' in manual 'Writing R
Extensions'.
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking data for non-ASCII characters ... OK
* creating digeR-Ex.R ... OK
* checking examples ... OK
* creating digeR-manual.tex ... OK
* checking digeR-manual.tex using pdflatex ... ERROR
LaTeX errors when creating PDF version.
This typically indicates Rd problems.
LaTeX errors found:
! Missing $ inserted.
<inserted text> 
                $
l.109 }
       
! Extra }, or forgotten $.
<template> \unskip \hfil }
                          \hskip \tabcolsep \endtemplate 
l.109 }
       
! Missing $ inserted.
<inserted text> 
                $
l.109 }
       
! Missing } inserted.
<inserted text> 
                }
l.109 }