* using log directory 'd:/Rcompile/CRANpkg/local/2.8/fishmethods.Rcheck' * using R version 2.8.1 (2008-12-22) * using session charset: ISO8859-1 * checking for file 'fishmethods/DESCRIPTION' ... OK * this is package 'fishmethods' version '0.0-1' * checking package name space information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking whether package 'fishmethods' can be installed ... OK * checking package directory ... OK * checking for portable file names ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the name space can be loaded with stated dependencies ... OK * checking for unstated dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... NOTE baglimit: no visible binding for global variable 'ID_CODE' baglimit: no visible binding for global variable 'FSHINSP' baglimit: no visible binding for global variable 'ST' baglimit: no visible binding for global variable 'LEADER' baglimit: no visible binding for global variable 'NUM_FISH' baglimit: no visible binding for global variable 'MODE_FX' baglimit: no visible binding for global variable 'CNTRBTRS' baglimit: no visible binding for global variable 'CATCH' baglimit: no visible binding for global variable 'NUMRTRIP' bhnoneq : Zest: no visible binding for '<<-' assignment to 'Lpred' bhnoneq : Zest: no visible binding for global variable 'Lpred' bhnoneq: no visible binding for '<<-' assignment to 'results' bhnoneq: no visible binding for global variable 'results' bhnoneq: no visible binding for global variable 'Lpred' catchpertrip: no visible binding for global variable 'ID_CODE' catchpertrip: no visible binding for global variable 'FSHINSP' catchpertrip: no visible binding for global variable 'ST' catchpertrip: no visible binding for global variable 'LEADER' catchpertrip: no visible binding for global variable 'NUM_FISH' catchpertrip: no visible binding for global variable 'MODE_FX' catchpertrip: no visible binding for global variable 'NUMRTRIP' catchseries: no visible binding for global variable 'ST' catchseries: no visible binding for global variable 'YEAR' catchseries: no visible binding for global variable 'WAVE' catchseries: no visible binding for global variable 'MODE_FX' catchseries: no visible binding for global variable 'AREA_X' catchseries: no visible binding for global variable 'SUB_REG' catchseries: no visible binding for global variable 'TYPEA' catchseries: no visible binding for global variable 'TYPEA.VAR' catchseries: no visible binding for global variable 'TYPEB1' catchseries: no visible binding for global variable 'TYPEB1.VAR' catchseries: no visible binding for global variable 'HARVEST' catchseries: no visible binding for global variable 'HARV.VAR' catchseries: no visible binding for global variable 'RELEASED' catchseries: no visible binding for global variable 'REL.VAR' catchseries: no visible binding for global variable 'HARWGT' catchseries: no visible binding for global variable 'HARWGT.VAR' catchseries: no visible binding for global variable 'TOTAL' catchseries: no visible binding for global variable 'TOT.VAR' deplet: no visible binding for '<<-' assignment to 'l.out' deplet: no visible binding for '<<-' assignment to 'd.out' deplet: no visible binding for '<<-' assignment to 'sch.out' deplet : ml: no visible binding for '<<-' assignment to 'Q' deplet : ml: no visible binding for global variable 'Q' deplet: no visible binding for global variable 'Q' deplet : mlb: no visible binding for '<<-' assignment to 'Qb' deplet : mlb: no visible binding for global variable 'Qb' deplet: no visible binding for global variable 'Qb' deplet: no visible binding for '<<-' assignment to 'ml.out' deplet: no visible binding for '<<-' assignment to 'hosc.out' deplet: no visible binding for '<<-' assignment to 'hesc.out' deplet: no visible binding for '<<-' assignment to 'hemqle.out' lengthfreq: no visible binding for global variable 'ID_CODE' lengthfreq: no visible binding for global variable 'LNGTH' lengthfreq: no visible binding for global variable 'ST' lengthfreq: no visible binding for global variable 'WAVE' lengthfreq: no visible binding for global variable 'MODE_FX' lengthfreq: no visible binding for global variable 'AREA_X' lengthfreq: no visible binding for global variable 'SUB_REG' lengthfreq: no visible binding for global variable 'ESTLAND' pstrat: no visible binding for global variable 'YEAR' pstrat: no visible binding for global variable 'WAVE' pstrat: no visible binding for global variable 'SUB_REG' pstrat: no visible binding for global variable 'ST' pstrat: no visible binding for global variable 'MODE_FX' pstrat: no visible binding for global variable 'AREA_S' pstrat: no visible binding for global variable 'AREA_X' pstrat: no visible binding for global variable 'AREA' pstrat: no visible binding for global variable 'NUM_TYP4' pstrat: no visible binding for global variable 'HRSF' pstrat: no visible binding for global variable 'ADD_HRS' pstrat: no visible binding for global variable 'ID_CODE' pstrat: no visible binding for global variable 'CNTRBTRS' pstrat: no visible binding for global variable 'MONTH' pstrat: no visible binding for global variable 'INT_NUM' pstrat: no visible binding for global variable 'DIST' pstrat: no visible binding for global variable 'SP_CODE' pstrat: no visible binding for global variable 'NUM_FISH' pstrat: no visible binding for global variable 'DISPO' pstrat: no visible binding for global variable 'FSHINSP' pstrat: no visible binding for global variable 'WGT' pstrat: no visible binding for global variable 'LNGTH' sbpr : getF: no visible binding for '<<-' assignment to 'sss' sbpr: no visible binding for global variable 'sss' vblrt: no visible binding for global variable 'wgt' * checking Rd files ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking data for non-ASCII characters ... OK * creating fishmethods-Ex.R ... OK * checking examples ... OK * creating fishmethods-manual.tex ... OK * checking fishmethods-manual.tex using pdflatex ... OK