* using log directory 'd:/Rcompile/CRANpkg/local/2.8/sma.Rcheck'
* using R version 2.8.1 beta (2008-12-12 r47183)
* using session charset: ISO8859-1
* checking for file 'sma/DESCRIPTION' ... OK
* this is package 'sma' version '0.5.15'
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'sma' can be installed ... WARNING
Found the following significant warnings:
  Warning: '\#' is an unrecognized escape in a character string
  Warning: unrecognized escape removed from "but the suffixes must be integers 1,2, ..., \# of arrays. \n"
  Warning: file 'MouseArray.RData' has magic number 'RDX1'
See 'd:/Rcompile/CRANpkg/local/2.8/sma.Rcheck/00install.out' for details.
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... WARNING
Unknown encoding with non-ASCII data
Fields with non-ASCII values:
  Author
See the information on DESCRIPTION files in section 'Creating R
packages' of the 'Writing R Extensions' manual.

* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... WARNING
Warnings in file 'R/Rinit.R':
  '\#' is an unrecognized escape in a character string
  unrecognized escape removed from "but the suffixes must be integers 1,2, ..., \# of arrays. \n"
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... WARNING
c:
  function(..., recursive)
c.func:
  function(Xprep, para)

c:
  function(..., recursive)
c.func.est:
  function(Xprep, para)

See section 'Generic functions and methods' of the 'Writing R Extensions'
manual.
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
ma.func: no visible global function definition for 'txt'
scale.na: no visible global function definition for 'applyy'
* checking Rd files ... WARNING
Rd files with unknown encoding:
  plot.bayesian.Rd
  stat.bay.est.Rd
  stat.bayesian.Rd

See the chapter 'Writing R documentation files' in manual 'Writing R
Extensions'.
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... NOTE
S3 methods shown with full name in documentation object 'plot.bayesian':
  plot.bayesian

S3 methods shown with full name in documentation object 'plot.confband.lines':
  plot.confband.lines

S3 methods shown with full name in documentation object 'plot.confband.points':
  plot.confband.points

S3 methods shown with full name in documentation object 'plot.confband.text':
  plot.confband.text

S3 methods shown with full name in documentation object 'plot.cor':
  plot.cor

S3 methods shown with full name in documentation object 'plot.mat':
  plot.mat

S3 methods shown with full name in documentation object 'plot.mva':
  plot.mva

S3 methods shown with full name in documentation object 'plot.print.tip.lowess':
  plot.print.tip.lowess

S3 methods shown with full name in documentation object 'plot.qq':
  plot.qq

S3 methods shown with full name in documentation object 'plot.qqline':
  plot.qqline

S3 methods shown with full name in documentation object 'plot.scale.box':
  plot.scale.box

S3 methods shown with full name in documentation object 'plot.single.slide':
  plot.single.slide

S3 methods shown with full name in documentation object 'plot.smooth.line':
  plot.smooth.line

S3 methods shown with full name in documentation object 'plot.spatial':
  plot.spatial

S3 methods shown with full name in documentation object 'plot.svb':
  plot.svb

S3 methods shown with full name in documentation object 'plot.t2':
  plot.t2

The \usage entries for S3 methods should use the \method markup and not
their full name.
See the chapter 'Writing R documentation files' in manual 'Writing R
Extensions'.
* checking data for non-ASCII characters ... OK
* creating sma-Ex.R ... OK
* checking examples ... OK
* creating sma-manual.tex ... OK
* checking sma-manual.tex using pdflatex ... OK