* using log directory 'd:/Rcompile/CRANpkg/local/2.9/RBGL.Rcheck' * using R version 2.9.2 Patched (2009-09-02 r49531) * using session charset: ISO8859-1 * checking for file 'RBGL/DESCRIPTION' ... OK * this is package 'RBGL' version '1.22.0' * checking package name space information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking whether package 'RBGL' can be installed ... ERROR Installation failed. The installation logfile: * Installing *source* package 'RBGL' ... Using auto-selected zip options '--use-zip-help' untarring boost include tree... ** libs making DLL ... make[1]: Entering directory `/cygdrive/d/Rcompile/CRANpkg/local/2.9/RBGL/src' g++ -I"d:/Rcompile/recent/R-2.9.2/include" -IboostIncl -O2 -Wall -c bbc.cpp -o bbc.o boostIncl/boost/graph/dijkstra_shortest_paths.hpp: In function 'void boost::detail::dijkstra_dispatch2(const VertexListGraph&, typename boost::graph_traits::vertex_descriptor, DistanceMap, WeightMap, IndexMap, const Params&, ColorMap) [with VertexListGraph = boost::adjacency_list >, boost::property >, boost::no_property, boost::listS>, DistanceMap = boost::iterator_property_map<__gnu_cxx::__normal_iterator > >, boost::vec_adj_list_vertex_id_map >, unsigned int>, double, double&>, WeightMap = boost::adj_list_edge_property_map >, boost::edge_weight_t>, IndexMap = boost::vec_adj_list_vertex_id_map >, unsigned int>, Params = boost::bgl_named_params >, boost::property >, boost::no_property, boost::listS>, boost::adj_list_edge_property_map >, boost::edge_weight_t>, boost::iterator_property_map<__gnu_cxx::__normal_iterator, std::allocator > >*, std::vector, std::allocator > >, std::allocator, std::allocator > > > > >, boost::vec_adj_list_vertex_id_map >, unsigned int>, std::vector, std::allocator > >, std::vector, std::allocator > >&>, boost::iterator_property_map<__gnu_cxx::__normal_iterator > >, boost::vec_adj_list_vertex_id_map >, unsigned int>, double, double&>, boost::iterator_property_map<__gnu_cxx::__normal_iterator > >, boost::vec_adj_list_vertex_id_map >, unsigned int>, long long unsigned int, long long unsigned int&> >, boost::graph_visitor_t, boost::bgl_named_params > >, boost::vec_adj_list_vertex_id_map >, unsigned int>, double, double&>, boost::vertex_distance_t, boost::bgl_named_params >, unsigned int>, boost::vertex_index_t, boost::bgl_named_params >, boost::edge_weight_t>, boost::edge_weight_t, boost::no_property> > > >, ColorMap = boost::iterator_property_map<__gnu_cxx::__normal_iterator > >, boost::vec_adj_list_vertex_id_map >, unsigned int>, boost::default_color_type, boost::default_color_type&>]': boostIncl/boost/graph/dijkstra_shortest_paths.hpp:81: warning: 'bfs_vis.boost::detail::dijkstra_bfs_visitor >, boost::property >, boost::no_property, boost::listS>, boost::adj_list_edge_property_map >, boost::edge_weight_t>, boost::iterator_property_map<__gnu_cxx::__normal_iterator, std::allocator > >*, std::vector, std::allocator > >, std::allocator, std::allocator > > > > >, boost::vec_adj_list_vertex_id_map >, unsigned int>, std::vector, std::allocator > >, std::vector, std::allocator > >&>, boost::iterator_property_map<__gnu_cxx::__normal_iterator > >, boost::vec_adj_list_vertex_id_map >, unsigned int>, double, double&>, boost::iterator_property_map<__gnu_cxx::__normal_iterator > >, boost::vec_adj_list_vertex_id_map >, unsigned int>, long long unsigned int, long long unsigned int&> >, boost::relaxed_heap > >, boost::vec_adj_list_vertex_id_map >, unsigned int>, double, double&>, std::less >, boost::vec_adj_list_vertex_id_map >, unsigned int> >, boost::adj_list_edge_property_map >, boost::edge_weight_t>, boost::dummy_property_map, boost::iterator_property_map<__gnu_cxx::__normal_iterator > >, boost::vec_adj_list_vertex_id_map >, unsigned int>, double, double&>, boost::closed_plus, std::less >::m_decreased' is used uninitialized in this function boostIncl/boost/graph/dijkstra_shortest_paths.hpp:205: note: 'bfs_vis.boost::detail::dijkstra_bfs_visitor >, boost::property >, boost::no_property, boost::listS>, boost::adj_list_edge_property_map >, boost::edge_weight_t>, boost::iterator_property_map<__gnu_cxx::__normal_iterator, std::allocator > >*, std::vector, std::allocator > >, std::allocator, std::allocator > > > > >, boost::vec_adj_list_vertex_id_map >, unsigned int>, std::vector, std::allocator > >, std::vector, std::allocator > >&>, boost::iterator_property_map<__gnu_cxx::__normal_iterator > >, boost::vec_adj_list_vertex_id_map >, unsigned int>, double, double&>, boost::iterator_property_map<__gnu_cxx::__normal_iterator > >, boost::vec_adj_list_vertex_id_map >, unsigned int>, long long unsigned int, long long unsigned int&> >, boost::relaxed_heap > >, boost::vec_adj_list_vertex_id_map >, unsigned int>, double, double&>, std::less >, boost::vec_adj_list_vertex_id_map >, unsigned int> >, boost::adj_list_edge_property_map >, boost::edge_weight_t>, boost::dummy_property_map, boost::iterator_property_map<__gnu_cxx::__normal_iterator > >, boost::vec_adj_list_vertex_id_map >, unsigned int>, double, double&>, boost::closed_plus, std::less >::m_decreased' was declared here g++ -I"d:/Rcompile/recent/R-2.9.2/include" -IboostIncl -O2 -Wall -c cliques.cpp -o cliques.o g++ -I"d:/Rcompile/recent/R-2.9.2/include" -IboostIncl -O2 -Wall -c clusteringCoef.cpp -o clusteringCoef.o g++ -I"d:/Rcompile/recent/R-2.9.2/include" -IboostIncl -O2 -Wall -c dominatorTree.cpp -o dominatorTree.o g++ -I"d:/Rcompile/recent/R-2.9.2/include" -IboostIncl -O2 -Wall -c edmonds_optimum_branching.cpp -o edmonds_optimum_branching.o g++ -I"d:/Rcompile/recent/R-2.9.2/include" -IboostIncl -O2 -Wall -c hcs.cpp -o hcs.o boostIncl/boost/graph/detail/adjacency_list.hpp: In function 'typename boost::graph_traits::edges_size_type boost::min_cut(VertexListGraph&, OutputIterator, OutputIterator) [with VertexListGraph = const R_adjacency_list, OutputIterator = std::back_insert_iterator > >]': boostIncl/boost/graph/detail/adjacency_list.hpp:270: warning: 'p.boost::property, boost::no_property> > >::.boost::property, boost::no_property> >::.boost::property, boost::no_property>::m_value.boost::detail::edge_desc_impl::.boost::detail::edge_base::m_target' is used uninitialized in this function boostIncl/boost/graph/detail/adjacency_list.hpp:2232: note: 'p.boost::property, boost::no_property> > >::.boost::property, boost::no_property> >::.boost::property, boost::no_property>::m_value.boost::detail::edge_desc_impl::.boost::detail::edge_base::m_target' was declared here boostIncl/boost/graph/detail/adjacency_list.hpp:270: warning: 'p.boost::property, boost::no_property> > >::.boost::property, boost::no_property> >::.boost::property, boost::no_property>::m_value.boost::detail::edge_desc_impl::.boost::detail::edge_base::m_source' is used uninitialized in this function boostIncl/boost/graph/detail/adjacency_list.hpp:2232: note: 'p.boost::property, boost::no_property> > >::.boost::property, boost::no_property> >::.boost::property, boost::no_property>::m_value.boost::detail::edge_desc_impl::.boost::detail::edge_base::m_source' was declared here boostIncl/boost/graph/detail/adjacency_list.hpp:270: warning: 'p.boost::property, boost::no_property> > >::.boost::property, boost::no_property> >::.boost::property, boost::no_property>::m_value.boost::detail::edge_desc_impl::.boost::detail::edge_base::m_target' is used uninitialized in this function boostIncl/boost/graph/detail/adjacency_list.hpp:2232: note: 'p.boost::property, boost::no_property> > >::.boost::property, boost::no_property> >::.boost::property, boost::no_property>::m_value.boost::detail::edge_desc_impl::.boost::detail::edge_base::m_target' was declared here boostIncl/boost/graph/detail/adjacency_list.hpp:270: warning: 'p.boost::property, boost::no_property> > >::.boost::property, boost::no_property> >::.boost::property, boost::no_property>::m_value.boost::detail::edge_desc_impl::.boost::detail::edge_base::m_source' is used uninitialized in this function boostIncl/boost/graph/detail/adjacency_list.hpp:2232: note: 'p.boost::property, boost::no_property> > >::.boost::property, boost::no_property> >::.boost::property, boost::no_property>::m_value.boost::detail::edge_desc_impl::.boost::detail::edge_base::m_source' was declared here boostIncl/boost/graph/edge_connectivity.hpp:32: warning: 'p' may be used uninitialized in this function boostIncl/boost/graph/edge_connectivity.hpp:32: note: 'p' was declared here g++ -I"d:/Rcompile/recent/R-2.9.2/include" -IboostIncl -O2 -Wall -c incrConnComp.cpp -o incrConnComp.o g++ -I"d:/Rcompile/recent/R-2.9.2/include" -IboostIncl -O2 -Wall -c interfaces.cpp -o interfaces.o boostIncl/boost/graph/detail/adjacency_list.hpp: In function 'typename boost::graph_traits::degree_size_type boost::edge_connectivity(VertexListGraph&, OutputIterator) [with VertexListGraph = Graph_ud, OutputIterator = std::back_insert_iterator, std::allocator > > >]': boostIncl/boost/graph/detail/adjacency_list.hpp:270: warning: 'p.boost::property, boost::no_property> > >::.boost::property, boost::no_property> >::.boost::property, boost::no_property>::m_value.boost::detail::edge_desc_impl::.boost::detail::edge_base::m_target' is used uninitialized in this function boostIncl/boost/graph/detail/adjacency_list.hpp:2232: note: 'p.boost::property, boost::no_property> > >::.boost::property, boost::no_property> >::.boost::property, boost::no_property>::m_value.boost::detail::edge_desc_impl::.boost::detail::edge_base::m_target' was declared here boostIncl/boost/graph/detail/adjacency_list.hpp:270: warning: 'p.boost::property, boost::no_property> > >::.boost::property, boost::no_property> >::.boost::property, boost::no_property>::m_value.boost::detail::edge_desc_impl::.boost::detail::edge_base::m_source' is used uninitialized in this function boostIncl/boost/graph/detail/adjacency_list.hpp:2232: note: 'p.boost::property, boost::no_property> > >::.boost::property, boost::no_property> >::.boost::property, boost::no_property>::m_value.boost::detail::edge_desc_impl::.boost::detail::edge_base::m_source' was declared here boostIncl/boost/graph/detail/adjacency_list.hpp:270: warning: 'p.boost::property, boost::no_property> > >::.boost::property, boost::no_property> >::.boost::property, boost::no_property>::m_value.boost::detail::edge_desc_impl::.boost::detail::edge_base::m_target' is used uninitialized in this function boostIncl/boost/graph/detail/adjacency_list.hpp:2232: note: 'p.boost::property, boost::no_property> > >::.boost::property, boost::no_property> >::.boost::property, boost::no_property>::m_value.boost::detail::edge_desc_impl::.boost::detail::edge_base::m_target' was declared here boostIncl/boost/graph/detail/adjacency_list.hpp:270: warning: 'p.boost::property, boost::no_property> > >::.boost::property, boost::no_property> >::.boost::property, boost::no_property>::m_value.boost::detail::edge_desc_impl::.boost::detail::edge_base::m_source' is used uninitialized in this function boostIncl/boost/graph/detail/adjacency_list.hpp:2232: note: 'p.boost::property, boost::no_property> > >::.boost::property, boost::no_property> >::.boost::property, boost::no_property>::m_value.boost::detail::edge_desc_impl::.boost::detail::edge_base::m_source' was declared here boostIncl/boost/graph/edge_connectivity.hpp:32: warning: 'p' may be used uninitialized in this function boostIncl/boost/graph/edge_connectivity.hpp:32: note: 'p' was declared here g++ -I"d:/Rcompile/recent/R-2.9.2/include" -IboostIncl -O2 -Wall -c layout.cpp -o layout.o layout.cpp: In function 'SEXPREC* BGL_layout_internal(E_LAYOUT_METHOD, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*)': layout.cpp:116: warning: unused variable 'r' layout.cpp:117: warning: unused variable 'w' layout.cpp:118: warning: unused variable 'h' fruchterman_reingold.hpp: In function 'void boost::fruchterman_reingold_force_directed_layout(const Graph&, PositionMap, Dim, Dim, AttractiveForce, RepulsiveForce, ForcePairs, Cooling, DisplacementMap) [with Graph = boost::adjacency_list, boost::no_property> >, boost::property, boost::no_property, boost::listS>, PositionMap = boost::vec_adj_list_vertex_property_map, boost::no_property> >, boost::property, boost::no_property, boost::listS>, boost::adjacency_list, boost::no_property> >, boost::property, boost::no_property, boost::listS>*, boost::simple_point, boost::simple_point&, vertex_position_t>, Dim = double, AttractiveForce = boost::square_distance_attractive_force, RepulsiveForce = boost::square_distance_repulsive_force, ForcePairs = boost::grid_force_pairs, boost::no_property> >, boost::property, boost::no_property, boost::listS>, boost::adjacency_list, boost::no_property> >, boost::property, boost::no_property, boost::listS>*, boost::simple_point, boost::simple_point&, vertex_position_t> >, Cooling = boost::linear_cooling, DisplacementMap = boost::iterator_property_map<__gnu_cxx::__normal_iterator*, std::vector, std::allocator > > >, boost::vec_adj_list_vertex_id_map, boost::no_property> >, unsigned int>, boost::simple_point, boost::simple_point&>]': fruchterman_reingold.hpp:423: instantiated from 'static void boost::detail::fr_force_directed_layout::run(const Graph&, PositionMap, Dim, Dim, AttractiveForce, RepulsiveForce, ForcePairs, Cooling, boost::detail::error_property_not_found, const boost::bgl_named_params&) [with Graph = boost::adjacency_list, boost::no_property> >, boost::property, boost::no_property, boost::listS>, PositionMap = boost::vec_adj_list_vertex_property_map, boost::no_property> >, boost::property, boost::no_property, boost::listS>, boost::adjacency_list, boost::no_property> >, boost::property, boost::no_property, boost::listS>*, boost::simple_point, boost::simple_point&, vertex_position_t>, Dim = double, AttractiveForce = boost::square_distance_attractive_force, RepulsiveForce = boost::square_distance_repulsive_force, ForcePairs = boost::grid_force_pairs, boost::no_property> >, boost::property, boost::no_property, boost::listS>, boost::adjacency_list, boost::no_property> >, boost::property, boost::no_property, boost::listS>*, boost::simple_point, boost::simple_point&, vertex_position_t> >, Cooling = boost::linear_cooling, Param = boost::square_distance_attractive_force, Tag = boost::attractive_force_t, Rest = boost::no_property]' fruchterman_reingold.hpp:449: instantiated from 'void boost::fruchterman_reingold_force_directed_layout(const Graph&, PositionMap, Dim, Dim, const boost::bgl_named_params&) [with Graph = boost::adjacency_list, boost::no_property> >, boost::property, boost::no_property, boost::listS>, PositionMap = boost::vec_adj_list_vertex_property_map, boost::no_property> >, boost::property, boost::no_property, boost::listS>, boost::adjacency_list, boost::no_property> >, boost::property, boost::no_property, boost::listS>*, boost::simple_point, boost::simple_point&, vertex_position_t>, Dim = double, Param = boost::square_distance_attractive_force, Tag = boost::attractive_force_t, Rest = boost::no_property]' fruchterman_reingold.hpp:470: instantiated from 'void boost::fruchterman_reingold_force_directed_layout(const Graph&, PositionMap, Dim, Dim) [with Graph = IndexGraph, PositionMap = boost::vec_adj_list_vertex_property_map, boost::no_property> >, boost::property, boost::no_property, boost::listS>, boost::adjacency_list, boost::no_property> >, boost::property, boost::no_property, boost::listS>*, boost::simple_point, boost::simple_point&, vertex_position_t>, Dim = double]' layout.cpp:112: instantiated from here fruchterman_reingold.hpp:354: warning: suggest parentheses around assignment used as truth value boostIncl/boost/graph/dijkstra_shortest_paths.hpp: In function 'bool boost::johnson_all_pairs_shortest_paths(VertexAndEdgeListGraph&, DistanceMatrix&, VertexID, Weight, const BinaryPredicate&, const BinaryFunction&, const Infinity&, DistanceZero) [with VertexAndEdgeListGraph = const boost::adjacency_list, boost::no_property> >, boost::property, boost::no_property, boost::listS>, DistanceMatrix = __gnu_cxx::__normal_iterator >*, std::vector >, std::allocator > > > >, VertexID = boost::vec_adj_list_vertex_id_map, boost::no_property> >, unsigned int>, Weight = boost::adj_list_edge_property_map, boost::edge_weight_t>, BinaryPredicate = std::less, BinaryFunction = boost::closed_plus, Infinity = double, DistanceZero = double]': boostIncl/boost/graph/dijkstra_shortest_paths.hpp:81: warning: 'bfs_vis.boost::detail::dijkstra_bfs_visitor, boost::relaxed_heap, boost::property >, boost::no_property, boost::listS>, boost::adjacency_list, boost::property >, boost::no_property, boost::listS>*, double, double&, boost::vertex_distance_t>, std::less >, boost::vec_adj_list_vertex_id_map, unsigned int> >, boost::adj_list_edge_property_map >, boost::edge_weight2_t>, boost::dummy_property_map, boost::vec_adj_list_vertex_property_map, boost::property >, boost::no_property, boost::listS>, boost::adjacency_list, boost::property >, boost::no_property, boost::listS>*, double, double&, boost::vertex_distance_t>, boost::closed_plus, std::less >::m_decreased' is used uninitialized in this function boostIncl/boost/graph/dijkstra_shortest_paths.hpp:205: note: 'bfs_vis.boost::detail::dijkstra_bfs_visitor, boost::relaxed_heap, boost::property >, boost::no_property, boost::listS>, boost::adjacency_list, boost::property >, boost::no_property, boost::listS>*, double, double&, boost::vertex_distance_t>, std::less >, boost::vec_adj_list_vertex_id_map, unsigned int> >, boost::adj_list_edge_property_map >, boost::edge_weight2_t>, boost::dummy_property_map, boost::vec_adj_list_vertex_property_map, boost::property >, boost::no_property, boost::listS>, boost::adjacency_list, boost::property >, boost::no_property, boost::listS>*, double, double&, boost::vertex_distance_t>, boost::closed_plus, std::less >::m_decreased' was declared here g++ -I"d:/Rcompile/recent/R-2.9.2/include" -IboostIncl -O2 -Wall -c minST.cpp -o minST.o g++ -I"d:/Rcompile/recent/R-2.9.2/include" -IboostIncl -O2 -Wall -c mincut.cpp -o mincut.o boostIncl/boost/graph/push_relabel_max_flow.hpp: In member function 'void boost::detail::push_relabel::discharge(typename boost::graph_traits::vertex_descriptor) [with Graph = boost::adjacency_list, boost::no_property> > >, boost::no_property, boost::listS>, EdgeCapacityMap = boost::adj_list_edge_property_map, boost::no_property> > >, boost::edge_capacity_t>, ResidualCapacityEdgeMap = boost::adj_list_edge_property_map, boost::no_property> > >, boost::edge_residual_capacity_t>, ReverseEdgeMap = boost::adj_list_edge_property_map, const boost::detail::edge_desc_impl&, unsigned int, const boost::property, boost::no_property> > >, boost::edge_reverse_t>, VertexIndexMap = boost::vec_adj_list_vertex_id_map, FlowValue = double]': boostIncl/boost/graph/push_relabel_max_flow.hpp:340: warning: 'min_edge_iter.boost::detail::out_edge_iter<__gnu_cxx::__normal_iterator, boost::no_property> > > >*, std::vector, boost::no_property> > > >, std::allocator, boost::no_property> > > > > > >, unsigned int, boost::detail::edge_desc_impl, int>::m_src' may be used uninitialized in this function boostIncl/boost/graph/push_relabel_max_flow.hpp:340: note: 'min_edge_iter.boost::detail::out_edge_iter<__gnu_cxx::__normal_iterator, boost::no_property> > > >*, std::vector, boost::no_property> > > >, std::allocator, boost::no_property> > > > > > >, unsigned int, boost::detail::edge_desc_impl, int>::m_src' was declared here boostIncl/boost/graph/detail/adjacency_list.hpp: In function 'typename boost::graph_traits::edges_size_type boost::min_cut(VertexListGraph&, OutputIterator, OutputIterator) [with VertexListGraph = Graph_ud, OutputIterator = std::back_insert_iterator > >]': boostIncl/boost/graph/detail/adjacency_list.hpp:270: warning: 'p.boost::property, boost::no_property> > >::.boost::property, boost::no_property> >::.boost::property, boost::no_property>::m_value.boost::detail::edge_desc_impl::.boost::detail::edge_base::m_target' is used uninitialized in this function boostIncl/boost/graph/detail/adjacency_list.hpp:2232: note: 'p.boost::property, boost::no_property> > >::.boost::property, boost::no_property> >::.boost::property, boost::no_property>::m_value.boost::detail::edge_desc_impl::.boost::detail::edge_base::m_target' was declared here boostIncl/boost/graph/detail/adjacency_list.hpp:270: warning: 'p.boost::property, boost::no_property> > >::.boost::property, boost::no_property> >::.boost::property, boost::no_property>::m_value.boost::detail::edge_desc_impl::.boost::detail::edge_base::m_source' is used uninitialized in this function boostIncl/boost/graph/detail/adjacency_list.hpp:2232: note: 'p.boost::property, boost::no_property> > >::.boost::property, boost::no_property> >::.boost::property, boost::no_property>::m_value.boost::detail::edge_desc_impl::.boost::detail::edge_base::m_source' was declared here boostIncl/boost/graph/detail/adjacency_list.hpp:270: warning: 'p.boost::property, boost::no_property> > >::.boost::property, boost::no_property> >::.boost::property, boost::no_property>::m_value.boost::detail::edge_desc_impl::.boost::detail::edge_base::m_target' is used uninitialized in this function boostIncl/boost/graph/detail/adjacency_list.hpp:2232: note: 'p.boost::property, boost::no_property> > >::.boost::property, boost::no_property> >::.boost::property, boost::no_property>::m_value.boost::detail::edge_desc_impl::.boost::detail::edge_base::m_target' was declared here boostIncl/boost/graph/detail/adjacency_list.hpp:270: warning: 'p.boost::property, boost::no_property> > >::.boost::property, boost::no_property> >::.boost::property, boost::no_property>::m_value.boost::detail::edge_desc_impl::.boost::detail::edge_base::m_source' is used uninitialized in this function boostIncl/boost/graph/detail/adjacency_list.hpp:2232: note: 'p.boost::property, boost::no_property> > >::.boost::property, boost::no_property> >::.boost::property, boost::no_property>::m_value.boost::detail::edge_desc_impl::.boost::detail::edge_base::m_source' was declared here boostIncl/boost/graph/edge_connectivity.hpp:32: warning: 'p' may be used uninitialized in this function boostIncl/boost/graph/edge_connectivity.hpp:32: note: 'p' was declared here boostIncl/boost/graph/detail/adjacency_list.hpp: In function 'SEXPREC* BGL_max_flow_internal(SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, E_MF_METHOD)': boostIncl/boost/graph/detail/adjacency_list.hpp:270: warning: 'p.boost::property, boost::no_property> > >::.boost::property, boost::no_property> >::.boost::property, boost::no_property>::m_value.boost::detail::edge_desc_impl::.boost::detail::edge_base::m_target' is used uninitialized in this function boostIncl/boost/graph/detail/adjacency_list.hpp:2232: note: 'p.boost::property, boost::no_property> > >::.boost::property, boost::no_property> >::.boost::property, boost::no_property>::m_value.boost::detail::edge_desc_impl::.boost::detail::edge_base::m_target' was declared here boostIncl/boost/graph/detail/adjacency_list.hpp:270: warning: 'p.boost::property, boost::no_property> > >::.boost::property, boost::no_property> >::.boost::property, boost::no_property>::m_value.boost::detail::edge_desc_impl::.boost::detail::edge_base::m_source' is used uninitialized in this function boostIncl/boost/graph/detail/adjacency_list.hpp:2232: note: 'p.boost::property, boost::no_property> > >::.boost::property, boost::no_property> >::.boost::property, boost::no_property>::m_value.boost::detail::edge_desc_impl::.boost::detail::edge_base::m_source' was declared here boostIncl/boost/graph/detail/adjacency_list.hpp:270: warning: 'p.boost::property, boost::no_property> > >::.boost::property, boost::no_property> >::.boost::property, boost::no_property>::m_value.boost::detail::edge_desc_impl::.boost::detail::edge_base::m_target' is used uninitialized in this function boostIncl/boost/graph/detail/adjacency_list.hpp:2232: note: 'p.boost::property, boost::no_property> > >::.boost::property, boost::no_property> >::.boost::property, boost::no_property>::m_value.boost::detail::edge_desc_impl::.boost::detail::edge_base::m_target' was declared here boostIncl/boost/graph/detail/adjacency_list.hpp:270: warning: 'p.boost::property, boost::no_property> > >::.boost::property, boost::no_property> >::.boost::property, boost::no_property>::m_value.boost::detail::edge_desc_impl::.boost::detail::edge_base::m_source' is used uninitialized in this function boostIncl/boost/graph/detail/adjacency_list.hpp:2232: note: 'p.boost::property, boost::no_property> > >::.boost::property, boost::no_property> >::.boost::property, boost::no_property>::m_value.boost::detail::edge_desc_impl::.boost::detail::edge_base::m_source' was declared here g++ -I"d:/Rcompile/recent/R-2.9.2/include" -IboostIncl -O2 -Wall -c ordering.cpp -o ordering.o g++ -I"d:/Rcompile/recent/R-2.9.2/include" -IboostIncl -O2 -Wall -c planar.cpp -o planar.o planar.cpp: In function 'SEXPREC* planarFaceTraversal(SEXPREC*, SEXPREC*, SEXPREC*)': planar.cpp:151: warning: comparison between signed and unsigned integer expressions planar.cpp:153: warning: comparison between signed and unsigned integer expressions planar.cpp:161: warning: comparison between signed and unsigned integer expressions planar.cpp:165: warning: comparison between signed and unsigned integer expressions planar.cpp: In function 'SEXPREC* planarCanonicalOrdering(SEXPREC*, SEXPREC*, SEXPREC*)': planar.cpp:256: warning: comparison between signed and unsigned integer expressions planar.cpp: In function 'SEXPREC* isStraightLineDrawing(SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*)': planar.cpp:369: warning: comparison between signed and unsigned integer expressions planar.cpp: In function 'SEXPREC* isKuratowskiSubgraph(SEXPREC*, SEXPREC*, SEXPREC*)': planar.cpp:461: warning: unused variable 'i' planar.cpp: In function 'SEXPREC* makeConnected(SEXPREC*, SEXPREC*, SEXPREC*)': planar.cpp:485: warning: comparison between signed and unsigned integer expressions planar.cpp: In function 'SEXPREC* makeBiconnectedPlanar(SEXPREC*, SEXPREC*, SEXPREC*)': planar.cpp:539: warning: comparison between signed and unsigned integer expressions boostIncl/boost/graph/planar_detail/boyer_myrvold_impl.hpp: In member function 'void boost::boyer_myrvold_impl::extract_kuratowski_subgraph(OutputIterator, EdgeIndexMap) [with OutputIterator = std::back_insert_iterator, std::allocator > > >, EdgeIndexMap = boost::adj_list_edge_property_map, boost::edge_index_t>, Graph = boost::adjacency_list, boost::property, boost::no_property, boost::listS>, VertexIndexMap = boost::vec_adj_list_vertex_id_map, unsigned int>, StoreOldHandlesPolicy = boost::graph::detail::store_old_handles, StoreEmbeddingPolicy = boost::graph::detail::no_embedding]': boostIncl/boost/graph/planar_detail/boyer_myrvold_impl.hpp:1279: warning: 'previous_vertex' may be used uninitialized in this function boostIncl/boost/graph/planar_detail/boyer_myrvold_impl.hpp:1238: warning: 'bicomp_root' may be used uninitialized in this function boostIncl/boost/graph/planar_detail/boyer_myrvold_impl.hpp:1237: warning: 'z' may be used uninitialized in this function boostIncl/boost/graph/max_cardinality_matching.hpp: In member function 'bool boost::edmonds_augmenting_path_finder::augment_matching() [with Graph = R_adjacency_list, MateMap = unsigned int*, VertexIndexMap = boost::vec_adj_list_vertex_id_map, unsigned int>]': boostIncl/boost/graph/max_cardinality_matching.hpp:231: warning: 'w' may be used uninitialized in this function boostIncl/boost/graph/max_cardinality_matching.hpp:231: warning: 'v' may be used uninitialized in this function boostIncl/boost/graph/chrobak_payne_drawing.hpp: In function 'void boost::chrobak_payne_straight_line_drawing(const Graph&, PlanarEmbedding, ForwardIterator, ForwardIterator, GridPositionMap, VertexIndexMap) [with Graph = boost::adjacency_list, boost::property, boost::no_property, boost::listS>, PlanarEmbedding = boost::iterator_property_map<__gnu_cxx::__normal_iterator, std::allocator > >*, std::vector, std::allocator > >, std::allocator, std::allocator > > > > >, boost::vec_adj_list_vertex_id_map, unsigned int>, std::vector, std::allocator > >, std::vector, std::allocator > >&>, ForwardIterator = __gnu_cxx::__normal_iterator > >, GridPositionMap = boost::iterator_property_map<__gnu_cxx::__normal_iterator > >, boost::vec_adj_list_vertex_id_map, unsigned int>, coord_t, coord_t&>, VertexIndexMap = boost::vec_adj_list_vertex_id_map, unsigned int>]': boostIncl/boost/graph/chrobak_payne_drawing.hpp:208: warning: 'next_to_rightmost' may be used uninitialized in this function boostIncl/boost/graph/planar_canonical_ordering.hpp: In function 'void boost::planar_canonical_ordering(const Graph&, PlanarEmbedding, OutputIterator, VertexIndexMap) [with Graph = boost::adjacency_list, boost::property, boost::no_property, boost::listS>, PlanarEmbedding = boost::iterator_property_map<__gnu_cxx::__normal_iterator, std::allocator > >*, std::vector, std::allocator > >, std::allocator, std::allocator > > > > >, boost::vec_adj_list_vertex_id_map, unsigned int>, std::vector, std::allocator > >, std::vector, std::allocator > >&>, OutputIterator = std::back_insert_iterator > >, VertexIndexMap = boost::vec_adj_list_vertex_id_map, unsigned int>]': boostIncl/boost/graph/planar_canonical_ordering.hpp:68: warning: 'second_vertex' may be used uninitialized in this function g++ -I"d:/Rcompile/recent/R-2.9.2/include" -IboostIncl -O2 -Wall -c shortestPath.cpp -o shortestPath.o boostIncl/boost/graph/dijkstra_shortest_paths.hpp: In function 'bool boost::johnson_all_pairs_shortest_paths(VertexAndEdgeListGraph&, DistanceMatrix&, VertexID, Weight, const BinaryPredicate&, const BinaryFunction&, const Infinity&, DistanceZero) [with VertexAndEdgeListGraph = R_adjacency_list, DistanceMatrix = Basic2DMatrix, VertexID = boost::vec_adj_list_vertex_id_map, unsigned int>, Weight = boost::adj_list_edge_property_map, boost::edge_weight_t>, BinaryPredicate = std::less, BinaryFunction = boost::closed_plus, Infinity = double, DistanceZero = double]': boostIncl/boost/graph/dijkstra_shortest_paths.hpp:81: warning: 'bfs_vis.boost::detail::dijkstra_bfs_visitor, boost::relaxed_heap, boost::property >, boost::no_property, boost::listS>, boost::adjacency_list, boost::property >, boost::no_property, boost::listS>*, double, double&, boost::vertex_distance_t>, std::less >, boost::vec_adj_list_vertex_id_map, unsigned int> >, boost::adj_list_edge_property_map >, boost::edge_weight2_t>, boost::dummy_property_map, boost::vec_adj_list_vertex_property_map, boost::property >, boost::no_property, boost::listS>, boost::adjacency_list, boost::property >, boost::no_property, boost::listS>*, double, double&, boost::vertex_distance_t>, boost::closed_plus, std::less >::m_decreased' is used uninitialized in this function boostIncl/boost/graph/dijkstra_shortest_paths.hpp:205: note: 'bfs_vis.boost::detail::dijkstra_bfs_visitor, boost::relaxed_heap, boost::property >, boost::no_property, boost::listS>, boost::adjacency_list, boost::property >, boost::no_property, boost::listS>*, double, double&, boost::vertex_distance_t>, std::less >, boost::vec_adj_list_vertex_id_map, unsigned int> >, boost::adj_list_edge_property_map >, boost::edge_weight2_t>, boost::dummy_property_map, boost::vec_adj_list_vertex_property_map, boost::property >, boost::no_property, boost::listS>, boost::adjacency_list, boost::property >, boost::no_property, boost::listS>*, double, double&, boost::vertex_distance_t>, boost::closed_plus, std::less >::m_decreased' was declared here g++ -I"d:/Rcompile/recent/R-2.9.2/include" -IboostIncl -O2 -Wall -c sna.cpp -o sna.o boostIncl/boost/graph/detail/adjacency_list.hpp: In function 'SEXPREC* lambdaSets(SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*)': boostIncl/boost/graph/detail/adjacency_list.hpp:270: warning: 'p.boost::property, boost::no_property> > >::.boost::property, boost::no_property> >::.boost::property, boost::no_property>::m_value.boost::detail::edge_desc_impl::.boost::detail::edge_base::m_target' is used uninitialized in this function boostIncl/boost/graph/detail/adjacency_list.hpp:2232: note: 'p.boost::property, boost::no_property> > >::.boost::property, boost::no_property> >::.boost::property, boost::no_property>::m_value.boost::detail::edge_desc_impl::.boost::detail::edge_base::m_target' was declared here boostIncl/boost/graph/detail/adjacency_list.hpp:270: warning: 'p.boost::property, boost::no_property> > >::.boost::property, boost::no_property> >::.boost::property, boost::no_property>::m_value.boost::detail::edge_desc_impl::.boost::detail::edge_base::m_source' is used uninitialized in this function boostIncl/boost/graph/detail/adjacency_list.hpp:2232: note: 'p.boost::property, boost::no_property> > >::.boost::property, boost::no_property> >::.boost::property, boost::no_property>::m_value.boost::detail::edge_desc_impl::.boost::detail::edge_base::m_source' was declared here boostIncl/boost/graph/detail/adjacency_list.hpp:270: warning: 'p.boost::property, boost::no_property> > >::.boost::property, boost::no_property> >::.boost::property, boost::no_property>::m_value.boost::detail::edge_desc_impl::.boost::detail::edge_base::m_target' is used uninitialized in this function boostIncl/boost/graph/detail/adjacency_list.hpp:2232: note: 'p.boost::property, boost::no_property> > >::.boost::property, boost::no_property> >::.boost::property, boost::no_property>::m_value.boost::detail::edge_desc_impl::.boost::detail::edge_base::m_target' was declared here boostIncl/boost/graph/detail/adjacency_list.hpp:270: warning: 'p.boost::property, boost::no_property> > >::.boost::property, boost::no_property> >::.boost::property, boost::no_property>::m_value.boost::detail::edge_desc_impl::.boost::detail::edge_base::m_source' is used uninitialized in this function boostIncl/boost/graph/detail/adjacency_list.hpp:2232: note: 'p.boost::property, boost::no_property> > >::.boost::property, boost::no_property> >::.boost::property, boost::no_property>::m_value.boost::detail::edge_desc_impl::.boost::detail::edge_base::m_source' was declared here boostIncl/boost/graph/dijkstra_shortest_paths.hpp: In function 'bool boost::johnson_all_pairs_shortest_paths(VertexAndEdgeListGraph&, DistanceMatrix&, VertexID, Weight, const BinaryPredicate&, const BinaryFunction&, const Infinity&, DistanceZero) [with VertexAndEdgeListGraph = R_adjacency_list, DistanceMatrix = Basic2DMatrix, VertexID = boost::vec_adj_list_vertex_id_map, unsigned int>, Weight = boost::adj_list_edge_property_map, boost::edge_weight_t>, BinaryPredicate = std::less, BinaryFunction = boost::closed_plus, Infinity = double, DistanceZero = double]': boostIncl/boost/graph/dijkstra_shortest_paths.hpp:81: warning: 'bfs_vis.boost::detail::dijkstra_bfs_visitor, boost::relaxed_heap, boost::property >, boost::no_property, boost::listS>, boost::adjacency_list, boost::property >, boost::no_property, boost::listS>*, double, double&, boost::vertex_distance_t>, std::less >, boost::vec_adj_list_vertex_id_map, unsigned int> >, boost::adj_list_edge_property_map >, boost::edge_weight2_t>, boost::dummy_property_map, boost::vec_adj_list_vertex_property_map, boost::property >, boost::no_property, boost::listS>, boost::adjacency_list, boost::property >, boost::no_property, boost::listS>*, double, double&, boost::vertex_distance_t>, boost::closed_plus, std::less >::m_decreased' is used uninitialized in this function boostIncl/boost/graph/dijkstra_shortest_paths.hpp:205: note: 'bfs_vis.boost::detail::dijkstra_bfs_visitor, boost::relaxed_heap, boost::property >, boost::no_property, boost::listS>, boost::adjacency_list, boost::property >, boost::no_property, boost::listS>*, double, double&, boost::vertex_distance_t>, std::less >, boost::vec_adj_list_vertex_id_map, unsigned int> >, boost::adj_list_edge_property_map >, boost::edge_weight2_t>, boost::dummy_property_map, boost::vec_adj_list_vertex_property_map, boost::property >, boost::no_property, boost::listS>, boost::adjacency_list, boost::property >, boost::no_property, boost::listS>*, double, double&, boost::vertex_distance_t>, boost::closed_plus, std::less >::m_decreased' was declared here g++ -I"d:/Rcompile/recent/R-2.9.2/include" -IboostIncl -O2 -Wall -c transitive_closure.cpp -o transitive_closure.o g++ -I"d:/Rcompile/recent/R-2.9.2/include" -IboostIncl -O2 -Wall -c wavefront.cpp -o wavefront.o g++ -shared -s -o RBGL.dll tmp.def bbc.o cliques.o clusteringCoef.o dominatorTree.o edmonds_optimum_branching.o hcs.o incrConnComp.o interfaces.o layout.o minST.o mincut.o ordering.o planar.o shortestPath.o sna.o transitive_closure.o wavefront.o -Ld:/Rcompile/recent/R-2.9.2/bin -lR make[1]: Leaving directory `/cygdrive/d/Rcompile/CRANpkg/local/2.9/RBGL/src' ... done ** R ** data ** inst ** preparing package for lazy loading Error in library.dynam(lib, package, package.lib) : shared library 'BioC_graph' not found Error : package 'graph' could not be loaded ERROR: lazy loading failed for package 'RBGL' * Removing 'd:/Rcompile/CRANpkg/lib/2.9/RBGL' * Restoring previous 'd:/Rcompile/CRANpkg/lib/2.9/RBGL'