* using log directory 'd:/Rcompile/CRANpkg/local/2.9/aaMI.Rcheck'
* using R version 2.9.2 (2009-08-24)
* using session charset: ISO8859-1
* checking for file 'aaMI/DESCRIPTION' ... OK
* this is package 'aaMI' version '1.0-1'
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'aaMI' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
Found possibly global 'T' or 'F' in the following functions:
  read.CX read.FASTA read.GDoc
* checking Rd files ... WARNING
Rd files with unknown sections:
  read.CX.Rd: Author
  read.FASTA.Rd: Author
  read.GDoc.Rd: Author

See the chapter 'Writing R documentation files' in manual 'Writing R
Extensions'.
* checking Rd files against version 2 parser ... WARNING
*** error on file ./man/read.CX.Rd
Error in parse_Rd("./man/read.CX.Rd", encoding = "unknown") : 
  ./man/read.CX.Rd:9:1: unexpected UNKNOWN
8: }
9: \Details
   ^

*** error on file ./man/read.FASTA.Rd
Error in parse_Rd("./man/read.FASTA.Rd", encoding = "unknown") : 
  ./man/read.FASTA.Rd:9:1: unexpected UNKNOWN
8: }
9: \Details
   ^

*** error on file ./man/read.GDoc.Rd
Error in parse_Rd("./man/read.GDoc.Rd", encoding = "unknown") : 
  ./man/read.GDoc.Rd:9:1: unexpected UNKNOWN
8: }
9: \Details
   ^

problems found in 'read.CX.Rd', 'read.FASTA.Rd', 'read.GDoc.Rd'
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking examples ... OK
* checking PDF version of manual ... OK