* using log directory 'd:/Rcompile/CRANpkg/local/2.9/asuR.Rcheck'
* using R version 2.9.2 Patched (2009-09-02 r49531)
* using session charset: ISO8859-1
* checking for file 'asuR/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'asuR' version '0.08-24'
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'asuR' can be installed ... WARNING
Found the following significant warnings:
  Warning: unmatched right brace in file 'colVars.Rd' on line 28
  Warning: unmatched right brace in file 'colVars.Rd' on line 28
  Warning: unmatched right brace in file 'growth.Rd' on line 22
  Warning: unmatched right brace in file 'growth.Rd' on line 22
  Warning: unmatched right brace in file 'mytrees.Rd' on line 18
  Warning: unmatched right brace in file 'mytrees.Rd' on line 19
  Warning: unmatched right brace in file 'mytrees.Rd' on line 18
  Warning: unmatched right brace in file 'mytrees.Rd' on line 19
  Warning: unmatched right brace in file 'pea.Rd' on line 20
  Warning: unmatched right brace in file 'pea.Rd' on line 20
  Warning: unmatched right brace in file 'wellplate.Rd' on line 34
  Warning: unmatched right brace in file 'wellplate.Rd' on line 34
See 'd:/Rcompile/CRANpkg/local/2.9/asuR.Rcheck/00install.out' for details.
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
dep.glm: no visible binding for global variable 'my.data'
lep.glm: no visible binding for global variable 'response.values'
lep.glm: no visible binding for global variable 'my.data'
nep.lmer: no visible binding for global variable 'my.data'
nrp.lmer: no visible binding for global variable 'fixed.terms.factor'
nrp.lmer: no visible binding for global variable 'my.data'
parseFormula.glm: no visible binding for '<<-' assignment to
  'response.var'
parseFormula.glm: no visible binding for '<<-' assignment to
  'response.term'
parseFormula.glm: no visible binding for '<<-' assignment to
  'predict.vars.numeric'
parseFormula.glm: no visible binding for '<<-' assignment to
  'predict.terms.numeric'
parseFormula.glm: no visible binding for '<<-' assignment to
  'index_coef.terms.numeric'
parseFormula.glm: no visible binding for global variable
  'predict.terms.numeric'
parseFormula.glm: no visible binding for '<<-' assignment to 'my.data'
parseFormula.glm: no visible binding for global variable 'response.var'
parseFormula.glm: no visible binding for '<<-' assignment to
  'intercept.logical'
parseFormula.lm: no visible binding for '<<-' assignment to
  'terms.numeric'
parseFormula.lm: no visible binding for '<<-' assignment to
  'response.var'
parseFormula.lm: no visible binding for '<<-' assignment to
  'response.term'
parseFormula.lm: no visible binding for '<<-' assignment to
  'predict.vars.numeric'
parseFormula.lm: no visible binding for '<<-' assignment to
  'predict.terms.numeric'
parseFormula.lm: no visible binding for global variable 'terms.numeric'
parseFormula.lm: no visible binding for '<<-' assignment to
  'my.data.glm'
parseFormula.lm: no visible binding for global variable 'response.var'
parseFormula.lm: no visible binding for '<<-' assignment to
  'intercept.logical'
parseFormula.lmer: no visible binding for '<<-' assignment to
  'intercept.logical'
parseFormula.lmer: no visible binding for '<<-' assignment to
  'group.vars'
parseFormula.lmer: no visible binding for '<<-' assignment to
  'effect.vars'
parseFormula.lmer: no visible binding for '<<-' assignment to
  'fixed.terms.numeric'
parseFormula.lmer: no visible binding for '<<-' assignment to
  'fixed.terms.factor'
rfp.lmer: no visible binding for global variable 'my.data'
rfp.lmer: no visible binding for global variable 'fixed.terms.factor'
rgp.lmer: no visible binding for global variable 'my.data'
rgp.lmer: no visible binding for global variable 'rand.vars'
rpp.glm: no visible binding for global variable 'my.data'
rpp.glm: no visible binding for global variable 'predict.terms.numeric'
rpp.glm: no visible binding for global variable 'response.values'
rpp.lm: no visible binding for global variable 'predict.vars.numeric'
rpp.lm: no visible binding for global variable 'response.values.lm'
dep,glm: no visible binding for global variable 'my.data'
lep,glm: no visible binding for global variable 'response.values'
lep,glm: no visible binding for global variable 'my.data'
nep,lmer: no visible binding for global variable 'my.data'
nrp,lmer: no visible binding for global variable 'fixed.terms.factor'
nrp,lmer: no visible binding for global variable 'my.data'
parseFormula,glm: no visible binding for '<<-' assignment to
  'response.var'
parseFormula,glm: no visible binding for '<<-' assignment to
  'response.term'
parseFormula,glm: no visible binding for '<<-' assignment to
  'predict.vars.numeric'
parseFormula,glm: no visible binding for '<<-' assignment to
  'predict.terms.numeric'
parseFormula,glm: no visible binding for '<<-' assignment to
  'index_coef.terms.numeric'
parseFormula,glm: no visible binding for global variable
  'predict.terms.numeric'
parseFormula,glm: no visible binding for '<<-' assignment to 'my.data'
parseFormula,glm: no visible binding for global variable 'response.var'
parseFormula,glm: no visible binding for '<<-' assignment to
  'intercept.logical'
parseFormula,lm: no visible binding for '<<-' assignment to
  'terms.numeric'
parseFormula,lm: no visible binding for '<<-' assignment to
  'response.var'
parseFormula,lm: no visible binding for '<<-' assignment to
  'response.term'
parseFormula,lm: no visible binding for '<<-' assignment to
  'predict.vars.numeric'
parseFormula,lm: no visible binding for '<<-' assignment to
  'predict.terms.numeric'
parseFormula,lm: no visible binding for global variable 'terms.numeric'
parseFormula,lm: no visible binding for '<<-' assignment to
  'my.data.glm'
parseFormula,lm: no visible binding for global variable 'response.var'
parseFormula,lm: no visible binding for '<<-' assignment to
  'intercept.logical'
parseFormula,lmer: no visible binding for '<<-' assignment to
  'intercept.logical'
parseFormula,lmer: no visible binding for '<<-' assignment to
  'group.vars'
parseFormula,lmer: no visible binding for '<<-' assignment to
  'effect.vars'
parseFormula,lmer: no visible binding for '<<-' assignment to
  'fixed.terms.numeric'
parseFormula,lmer: no visible binding for '<<-' assignment to
  'fixed.terms.factor'
rfp,lmer: no visible binding for global variable 'my.data'
rfp,lmer: no visible binding for global variable 'fixed.terms.factor'
rgp,lmer: no visible binding for global variable 'my.data'
rgp,lmer: no visible binding for global variable 'rand.vars'
rpp,glm: no visible binding for global variable 'my.data'
rpp,glm: no visible binding for global variable 'predict.terms.numeric'
rpp,glm: no visible binding for global variable 'response.values'
rpp,lm: no visible binding for global variable 'predict.vars.numeric'
rpp,lm: no visible binding for global variable 'response.values.lm'
* checking Rd files ... OK
* checking Rd files against version 2 parser ... WARNING
*** error on file ./man/colVars.Rd
Error in parse_Rd("./man/colVars.Rd", encoding = "unknown") : 
  ./man/colVars.Rd:28:1: unexpected '}'
27:        <brahm@alum.mit.edu>, with help of course from the R-help gurus.}
28: }
    ^

*** error on file ./man/growth.Rd
Error in parse_Rd("./man/growth.Rd", encoding = "unknown") : 
  ./man/growth.Rd:22:1: unexpected '}'
21: }
22: }
    ^

*** error on file ./man/inspect.Rd
Error in parse_Rd("./man/inspect.Rd", encoding = "unknown") : 
  ./man/inspect.Rd:28:5: unexpected section header
27:   \item{which}{a character string; one of the following:
28:     \description
        ^

*** error on file ./man/mytrees.Rd
Error in parse_Rd("./man/mytrees.Rd", encoding = "unknown") : 
  ./man/mytrees.Rd:18:1: unexpected '}'
17: }
18: }
    ^

*** error on file ./man/pea.Rd
Error in parse_Rd("./man/pea.Rd", encoding = "unknown") : 
  ./man/pea.Rd:20:1: unexpected '}'
19: }
20: }
    ^

*** error on file ./man/wellplate.Rd
Error in parse_Rd("./man/wellplate.Rd", encoding = "unknown") : 
  ./man/wellplate.Rd:34:1: unexpected '}'
33: }
34: }
    ^

problems found in 'colVars.Rd', 'growth.Rd', 'inspect.Rd', 'mytrees.Rd', 'pea.Rd', 'wellplate.Rd'
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking data for non-ASCII characters ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... NOTE
*** PDFLaTeX Errors ***
File d:/Rcompile/CRANpkg/local/2.9/asuR.Rcheck/inst/doc/coursenotes.Rnw :
running 'texi2dvi' on 'coursenotes.tex' failed
LaTeX errors:
! LaTeX Error: File `mySlides.sty' not found.
Type X to quit or <RETURN> to proceed,
or enter new name. (Default extension: sty)
* checking PDF version of manual ... OK