* using log directory 'd:/Rcompile/CRANpkg/local/2.9/ppc.Rcheck' * using R version 2.9.2 (2009-08-24) * using session charset: ISO8859-1 * checking for file 'ppc/DESCRIPTION' ... OK * this is package 'ppc' version '1.01' * checking package name space information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking whether package 'ppc' can be installed ... WARNING Found the following significant warnings: Warning: unmatched right brace in file 'ppc.fdr.Rd' on line 7 Warning: unmatched right brace in file 'ppc.fdr.Rd' on line 7 Warning: unmatched right brace in file 'ppc.peak.summary.Rd' on line 27 Warning: unmatched right brace in file 'ppc.peak.summary.Rd' on line 27 See 'd:/Rcompile/CRANpkg/local/2.9/ppc.Rcheck/00install.out' for details. * checking package directory ... OK * checking for portable file names ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the name space can be loaded with stated dependencies ... OK * checking for unstated dependencies in R code ... WARNING 'library' or 'require' calls not declared from: class See the information on DESCRIPTION files in the chapter 'Creating R packages' of the 'Writing R Extensions' manual. * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... NOTE ppc.plot.hist: no visible global function definition for 'knn1' ppc.predict.peaks1: no visible global function definition for 'knn1' ppc.xl.get.user.parameters: no visible binding for global variable 'ppc.xl.current.user.parameters' ppc.xl.plothist: no visible global function definition for 'knn1' * checking Rd files ... OK * checking Rd files against version 2 parser ... WARNING *** error on file ./man/ppc.fdr.Rd Error in parse_Rd("./man/ppc.fdr.Rd", encoding = "unknown") : ./man/ppc.fdr.Rd:7:1: unexpected '}' 6: of the sample labels} 7: } ^ *** error on file ./man/ppc.peak.summary.Rd Error in parse_Rd("./man/ppc.peak.summary.Rd", encoding = "unknown") : ./man/ppc.peak.summary.Rd:27:1: unexpected '}' 26: peak info for each sample} 27: } ^ problems found in 'ppc.fdr.Rd', 'ppc.peak.summary.Rd' * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking line endings in C/C++/Fortran sources/headers ... OK * checking line endings in Makefiles ... OK * checking for portable use of $BLAS_LIBS ... OK * checking examples ... OK * checking PDF version of manual ... OK