* using log directory 'd:/Rcompile/CRANpkg/local/2.9/relations.Rcheck'
* using R version 2.9.2 Patched (2009-09-02 r49531)
* using session charset: ISO8859-1
* checking for file 'relations/DESCRIPTION' ... OK
* this is package 'relations' version '0.5-5'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'relations' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
Error in library.dynam(lib, package, package.lib) : 
  shared library 'BioC_graph' not found
* checking Rd files ... OK
* checking Rd files against version 2 parser ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking data for non-ASCII characters ... OK
* checking examples ... ERROR
Running examples in 'relations-Ex.R' failed.
The error most likely occurred in:

> ### * SVMBench
> 
> flush(stderr()); flush(stdout())
> 
> ### Name: SVMBench
> ### Title: SVM Benchmarking Data and Consensus Relations
> ### Aliases: SVM_Benchmarking_Classification SVM_Benchmarking_Regression
> ###   SVM_Benchmarking_Classification_Consensus
> ###   SVM_Benchmarking_Regression_Consensus
> ### Keywords: datasets
> 
> ### ** Examples
> 
> data("SVM_Benchmarking_Classification")
> 
> ## 21 data sets
> names(SVM_Benchmarking_Classification)
 [1] "BreastCancer"        "Cards"               "Circle"             
 [4] "Heart1"              "HouseVotes84"        "Ionosphere"         
 [7] "PimaIndiansDiabetes" "Sonar"               "Spirals"            
[10] "chess"               "credit"              "hepatitis"          
[13] "liver"               "monks3"              "musk"               
[16] "promotergene"        "ringnorm"            "threenorm"          
[19] "tictactoe"           "titanic"             "twonorm"            
> 
> ## 17 methods
> relation_domain(SVM_Benchmarking_Classification)
Relation domain:
A pair with elements:
{"bagging", "dbagging", "fda.bruto", "fda.mars", "glm", "knn", "lda",
 "lvq", "mart", "mda.bruto", "mda.mars", "multinom", "nnet", "qda",
 "randomForest", "rpart", "svm"}
{"bagging", "dbagging", "fda.bruto", "fda.mars", "glm", "knn", "lda",
 "lvq", "mart", "mda.bruto", "mda.mars", "multinom", "nnet", "qda",
 "randomForest", "rpart", "svm"}
> 
> ## select weak orders
> weak_orders <-
+     Filter(relation_is_weak_order, SVM_Benchmarking_Classification)
> 
> ## only the artifical data sets yield weak orders
> names(weak_orders)
[1] "Circle"   "Spirals"  "ringnorm"
> 
> ## visualize them using Hasse diagrams
> if(require("Rgraphviz")) plot(weak_orders)
Loading required package: Rgraphviz
Loading required package: graph
Error in library.dynam(lib, package, package.lib) : 
  shared library 'BioC_graph' not found
Error: package 'graph' could not be loaded
Execution halted