* using log directory 'd:/Rcompile/CRANpkg/local/2.9/tossm.Rcheck'
* using R version 2.9.2 Patched (2009-09-02 r49531)
* using session charset: ISO8859-1
* checking for file 'tossm/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'tossm' version '1.3'
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'tossm' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
adjust.pop.dyn: no visible global function definition for 'find.root'
agg.gs.series: no visible binding for global variable 'gs'
agg.gs.tseries: no visible binding for global variable 'gs'
breed.grow.die: no visible binding for global variable 'n.stages'
breed.grow.die: no visible binding for global variable 'n.bg'
breed.grow.die: no visible binding for global variable 'K'
breed.grow.die: no visible binding for global variable 'ttmat0'
breed.grow.die: no visible binding for global variable 'ttmatK'
breed.grow.die: no visible binding for global variable 'mm'
breed.grow.die: no visible binding for global variable 'R0'
breed.grow.die: no visible binding for global variable 'RK'
breed.grow.die: no visible binding for global variable 'M0'
breed.grow.die: no visible binding for global variable 'ma.al1'
breed.grow.die: no visible binding for global variable 'n.ma.als'
breed.grow.die: no visible binding for global variable 'ma.al2'
breed.grow.die: no visible binding for global variable 'pa.al1'
breed.grow.die: no visible binding for global variable 'n.pa.als'
breed.grow.die: no visible binding for global variable 'pa.al2'
count.alleles.by.f: no visible binding for global variable 'agg.gs'
count.alleles.by.f: no visible binding for global variable 'n.alleles'
count.alleles.by.f: no visible binding for global variable 'n.areas'
count.alleles.by.f: no visible binding for global variable 'n.loci'
get.SRM: no visible binding for global variable 'n.epoch'
hyptest.network.BSA: no visible binding for global variable
  'agg.gtypes'
hyptest.network.BSA: no visible binding for global variable 'edges'
hyptest.seq.BSA: no visible binding for global variable 'n.areas'
hyptest.seq.BSA: no visible binding for global variable 'n.loci'
hyptest.seq.BSA: no visible binding for global variable 'maxal'
hyptest.seq.BSA: no visible binding for global variable 'agg.gfreq'
km.simple.demo: no visible global function definition for
  'new.local.demo'
km.simple.demo: no visible global function definition for 'new.epoch'
km.simple.demo: no visible global function definition for 'new.locus'
old.bgd: no visible binding for global variable 'n.stages'
old.bgd: no visible binding for global variable 'n.bg'
old.bgd: no visible binding for global variable 'DD'
old.bgd: no visible binding for global variable 'K'
old.bgd: no visible binding for global variable 'S'
old.bgd: no visible binding for global variable 'mm'
old.bgd: no visible binding for global variable 'R'
old.bgd: no visible binding for global variable 'M'
old.bgd: no visible binding for global variable 'ma.al1'
old.bgd: no visible binding for global variable 'n.ma.als'
old.bgd: no visible binding for global variable 'ma.al2'
old.bgd: no visible binding for global variable 'pa.al1'
old.bgd: no visible binding for global variable 'n.pa.als'
old.bgd: no visible binding for global variable 'pa.al2'
prepare.rland: no visible binding for global variable 'S0'
prepare.rland: no visible binding for global variable 'SK'
prepare.rland: no visible binding for global variable 'ma'
prepare.rland: no visible binding for global variable 'pa'
print.tossm.obj: no visible binding for global variable 'abund.b'
print.tossm.obj: no visible binding for global variable 'abund.f'
print.tossm.obj: no visible binding for global variable 'catches'
print.tossm.obj: no visible binding for global variable 'effort'
print.tossm.obj: no visible binding for global variable 'FIMA.mu.map'
run.tossm: no visible binding for global variable 'CV'
run.tossm: no visible binding for global variable 'est'
run.tossm: no visible binding for global variable 'agg.gs'
run.tossm: no visible binding for global variable 'agg.gtypes'
structure.BSA: no visible binding for global variable 'agg.gtypes'
structure.BSA: no visible binding for global variable 'output.dir'
structure.BSA: no visible binding for global variable 'struct.outfile'
structure.BSA: no visible binding for global variable 'k'
structure.BSA: no visible binding for global variable 'agg.gs'
structure.BSA : <anonymous>: no visible binding for global variable
  'agg.gs'
wombsoft.BSA: no visible binding for global variable 'nb_x'
wombsoft.BSA: no visible binding for global variable 'nb_y'
wombsoft.BSA: no visible binding for global variable 'm'
wombsoft.BSA: no visible binding for global variable 'WCh'
wombsoft.BSA: no visible binding for global variable 'CBh'
wombsoft.BSA: no visible binding for global variable 'pB'
wombsoft.BSA: no visible binding for global variable 'sig.level'
wombsoft.BSA: no visible binding for global variable 'min.MU.size'
* checking Rd files ... OK
* checking Rd files against version 2 parser ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking data for non-ASCII characters ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking for portable use of $BLAS_LIBS ... OK
* checking examples ... OK
* checking PDF version of manual ... OK