* using log directory 'd:/Rcompile/CRANpkg/local/2.15/BayesQTLBIC.Rcheck'
* using R version 2.15.0 (2012-03-30)
* using platform: x86_64-pc-mingw32 (64-bit)
* using session charset: ISO8859-1
* checking for file 'BayesQTLBIC/DESCRIPTION' ... OK
* this is package 'BayesQTLBIC' version '1.0-2'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking whether package 'BayesQTLBIC' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
bicreg.models: warning in lm(y ~ 1, weight = wt): partial argument
  match of 'weight' to 'weights'
bicreg.models: warning in lsfit(rep(1, length(y)), y, wt = wt, int =
  FALSE): partial argument match of 'int' to 'intercept'
bicreg.models: warning in matrix(NA, nr = neval, nc = ncol(x)): partial
  argument match of 'nr' to 'nrow'
bicreg.models: warning in matrix(NA, nr = neval, nc = ncol(x)): partial
  argument match of 'nc' to 'ncol'
bicreg.qtl: warning in lm(y ~ 1, w = wt): partial argument match of 'w'
  to 'weights'
bicreg.qtl: warning in lm(y ~ . - wt, data = x.lm, w = wt): partial
  argument match of 'w' to 'weights'
bicreg.qtl: warning in lsfit(rep(1, length(y)), y, wt = wt, int =
  FALSE): partial argument match of 'int' to 'intercept'
bicreg.qtl: warning in matrix(NA, nr = neval, nc = ncol(x)): partial
  argument match of 'nr' to 'nrow'
bicreg.qtl: warning in matrix(NA, nr = neval, nc = ncol(x)): partial
  argument match of 'nc' to 'ncol'
bicreg2: warning in lm(y ~ 1, w = wt): partial argument match of 'w' to
  'weights'
bicreg2: warning in lm(y ~ . - wt, data = x.lm, w = wt): partial
  argument match of 'w' to 'weights'
bicreg2: warning in lsfit(rep(1, length(y)), y, wt = wt, int = FALSE):
  partial argument match of 'int' to 'intercept'
bicreg2: warning in matrix(NA, nr = neval, nc = ncol(x)): partial
  argument match of 'nr' to 'nrow'
bicreg2: warning in matrix(NA, nr = neval, nc = ncol(x)): partial
  argument match of 'nc' to 'ncol'
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking sizes of PDF files under 'inst/doc' ... OK
* checking installed files from 'inst/doc' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
** running examples for arch 'x64' ... OK
* checking PDF version of manual ... OK
NOTE: There was 1 note.
See
  'd:/Rcompile/CRANpkg/local/2.15/BayesQTLBIC.Rcheck/00check.log'
for details.