* using log directory 'd:/Rcompile/CRANpkg/local/2.15/JGR.Rcheck' * using R version 2.15.0 (2012-03-30) * using platform: x86_64-pc-mingw32 (64-bit) * using session charset: ISO8859-1 * checking for file 'JGR/DESCRIPTION' ... OK * this is package 'JGR' version '1.7-9' * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... NOTE As from R 2.14.0 all packages need a namespace. One will be generated on installation, but it is better to handcraft a NAMESPACE file: R CMD build will produce a suitable starting point. CRAN requires a NAMESPACE file for all submissions. * checking whether package 'JGR' can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking for portable file names ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * loading checks for arch 'i386' ** checking whether the package can be loaded ... OK ** checking whether the package can be loaded with stated dependencies ... OK ** checking whether the package can be unloaded cleanly ... OK * loading checks for arch 'x64' ** checking whether the package can be loaded ... OK ** checking whether the package can be loaded with stated dependencies ... OK ** checking whether the package can be unloaded cleanly ... OK * checking for unstated dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... NOTE File 'JGR/R/JGR.R': .First.lib calls: library(utils) library(rJava) cat("\nPlease type JGR() to download/launch console. Launchers can also be obtained at http://www.rforge.net/JGR/files/.\n\n") cat("\n\n *** WARNING *** Your R contains old GOMP library which does NOT work with other threads!\n This will lead to random crashes in R!\n Please update R to the latest patched version from http://R.research.att.com/\n\n") Package startup functions should not change the search path. Package startup functions should use 'packageStartupMessage' to generate messages. See section 'Good practice' in ?.onAttach. .First.lib: no visible binding for global variable 'Sys.putenv' * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... NOTE S3 methods shown with full name in documentation object 'jgr.supplements': 'print.hsearch' The \usage entries for S3 methods should use the \method markup and not their full name. See the chapter 'Writing R documentation files' in the 'Writing R Extensions' manual. * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking examples ... ** running examples for arch 'i386' ... OK ** running examples for arch 'x64' ... OK * checking PDF version of manual ... OK NOTE: There were 3 notes. See 'd:/Rcompile/CRANpkg/local/2.15/JGR.Rcheck/00check.log' for details.