* using log directory 'd:/Rcompile/CRANpkg/local/2.15/PBSadmb.Rcheck'
* using R version 2.15.0 (2012-03-30)
* using platform: x86_64-pc-mingw32 (64-bit)
* using session charset: ISO8859-1
* checking for file 'PBSadmb/DESCRIPTION' ... OK
* this is package 'PBSadmb' version '0.61.44'
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... NOTE
As from R 2.14.0 all packages need a namespace.
One will be generated on installation, but it is better to handcraft a
NAMESPACE file: R CMD build will produce a suitable starting point.
CRAN requires a NAMESPACE file for all submissions.
* checking whether package 'PBSadmb' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
File 'PBSadmb/R/zzz.r':
  .First.lib calls:
    cat("\nPBS ADMB", pkg_info$Version, "-- Copyright (C) 2008-09 Fisheries and Oceans Canada\n\nA complete user guide 'PBSadmbwin-UG.pdf' is located at \n",     userguide_path, "\n\nPackaged on", pkg_date, "\nPacific Biological Station, Nanaimo\n\nType admb() to start a GUI for operating ADMB.\n\n\n")

Package startup functions should use 'packageStartupMessage' to
  generate messages.
See section 'Good practice' in ?.onAttach.

.chooseCols: no visible binding for global variable 'prefix'
.win.appendLog: no visible binding for global variable 'prefix'
.win.checkADopts: no visible binding for global variable 'admpath'
.win.checkADopts: no visible binding for global variable 'gccpath'
.win.checkADopts: no visible binding for global variable 'editor'
.win.cleanAD: no visible binding for global variable 'prefix'
.win.compAD: no visible binding for global variable 'prefix'
.win.compAD: no visible binding for global variable 'raneff'
.win.compAD: no visible binding for global variable 'safe'
.win.convAD: no visible binding for global variable 'prefix'
.win.convAD: no visible binding for global variable 'raneff'
.win.editAD: no visible binding for global variable 'prefix'
.win.linkAD: no visible binding for global variable 'prefix'
.win.linkAD: no visible binding for global variable 'raneff'
.win.linkAD: no visible binding for global variable 'safe'
.win.makeAD: no visible binding for global variable 'prefix'
.win.makeAD: no visible binding for global variable 'raneff'
.win.makeAD: no visible binding for global variable 'safe'
.win.makeADopts: no visible binding for global variable 'admpath'
.win.makeADopts: no visible binding for global variable 'gccpath'
.win.makeADopts: no visible binding for global variable 'editor'
.win.plotMC: no visible binding for global variable 'prefix'
.win.plotMC: no visible binding for global variable 'pthin'
.win.plotMC: no visible binding for global variable 'PBSadmb'
.win.readADopts: no visible binding for global variable 'optfile'
.win.readRep: no visible binding for global variable 'toView'
.win.readRep: no visible binding for global variable 'prefix'
.win.readRep: no visible binding for global variable 'pltView'
.win.run: no visible binding for global variable 'runType'
.win.runAD: no visible binding for global variable 'prefix'
.win.runAD: no visible binding for global variable 'argvec'
.win.runAD: no visible binding for global variable 'logfile'
.win.runAD: no visible binding for global variable 'add'
.win.runAD: no visible binding for global variable 'verbose'
.win.runMC: no visible binding for global variable 'prefix'
.win.runMC: no visible binding for global variable 'nsims'
.win.runMC: no visible binding for global variable 'nthin'
.win.runMC: no visible binding for global variable 'logfile'
.win.runMC: no visible binding for global variable 'add'
.win.runMC: no visible binding for global variable 'verbose'
.win.runMC: no visible binding for '<<-' assignment to 'PBSadmb'
.win.runMC: no visible binding for global variable 'PBSadmb'
.win.showADargs: no visible binding for global variable 'prefix'
.win.showGUIargs: no visible binding for global variable 'runType'
.win.showGUIargs: no visible binding for global variable 'nsims'
.win.showGUIargs: no visible binding for global variable 'nthin'
.win.showGUIargs: no visible binding for global variable 'argvec'
.win.startLog: no visible binding for global variable 'prefix'
.win.viewCode: warning in ls(paste("package:", pkg, sep = ""), all =
  TRUE): partial argument match of 'all' to 'all.names'
.win.viewRep: no visible binding for global variable 'prefix'
.win.writeADopts: no visible binding for global variable 'optfile'
parseCmd: no visible binding for global variable 'ADMBcmd'
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking sizes of PDF files under 'inst/doc' ... NOTE
  'qpdf' made some significant size reductions:
     compacted 'admb-re.pdf' from 445Kb to 340Kb
     compacted 'admb.pdf' from 790Kb to 592Kb
     compacted 'autodif.pdf' from 614Kb to 450Kb
  consider running tools::compactPDF() on these files
* checking installed files from 'inst/doc' ... OK
* checking examples ... NONE
* checking PDF version of manual ... OK
NOTE: There were 3 notes.
See
  'd:/Rcompile/CRANpkg/local/2.15/PBSadmb.Rcheck/00check.log'
for details.