* using log directory 'd:/Rcompile/CRANpkg/local/2.15/SNPassoc.Rcheck'
* using R version 2.15.0 (2012-03-30)
* using platform: x86_64-pc-mingw32 (64-bit)
* using session charset: ISO8859-1
* checking for file 'SNPassoc/DESCRIPTION' ... OK
* this is package 'SNPassoc' version '1.8-1'
* package encoding: latin1
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking whether package 'SNPassoc' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
maxstat.matrix : pmax: warning in pmvnorm(lower, upper, mean, cor =
  sqrt(corr), ...): partial argument match of 'cor' to 'corr'
plot.SNPinteraction: warning in axis(1, at = c(1:nrow(x.OK)), label =
  label.SNPs, las = 3, cex.axis = 0.7, col = "darkgreen"): partial
  argument match of 'label' to 'labels'
plot.SNPinteraction: warning in axis(2, at = c(1:nrow(x.OK)), label =
  label.SNPs, las = 1, cex.axis = 0.7, col = "darkgreen"): partial
  argument match of 'label' to 'labels'
plot.WGassociation: warning in axis(1, at = c(1:length(xx)), label =
  rep("", length(xx)), pos = 0): partial argument match of 'label' to
  'labels'
plot.WGassociation: warning in axis(2, at = control.y, label =
  -control.y, pos = 1, xaxt = "n"): partial argument match of 'label'
  to 'labels'
plotMissing: warning in axis(1, at = c(1:length(label.SNPs)), label =
  label.SNPs, las = 3, cex.axis = 0.7): partial argument match of
  'label' to 'labels'
Found .Internal call in the following function:
  'scanWGassociation'
with calls to .Internal functions
  'unlist'

Packages should not call .Internal(): it is not part of the API, for
use only by R itself and subject to change without notice.
* checking Rd files ... NOTE
prepare_Rd: LD.Rd:69-71: Dropping empty section \examples
prepare_Rd: plotWGassociation.Rd:64-66: Dropping empty section \examples
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
* checking compiled code ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
** running examples for arch 'x64' ... OK
* checking PDF version of manual ... OK
NOTE: There were 2 notes.
See
  'd:/Rcompile/CRANpkg/local/2.15/SNPassoc.Rcheck/00check.log'
for details.