* using log directory 'd:/Rcompile/CRANpkg/local/2.15/alphahull.Rcheck'
* using R version 2.15.0 (2012-03-30)
* using platform: x86_64-pc-mingw32 (64-bit)
* using session charset: ISO8859-1
* checking for file 'alphahull/DESCRIPTION' ... OK
* this is package 'alphahull' version '0.2-1'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking whether package 'alphahull' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
ahull: warning in matrix(ashape.obj$x[addp, 1:2], nc = 2, byr = FALSE):
  partial argument match of 'nc' to 'ncol'
ahull: warning in matrix(ashape.obj$x[addp, 1:2], nc = 2, byr = FALSE):
  partial argument match of 'byr' to 'byrow'
ashape: warning in matrix(t(aux[in.ashape, ]), byrow = TRUE, nc = 12):
  partial argument match of 'nc' to 'ncol'
complement: warning in matrix(mesh[case1.1, ], nr = n.case1.1): partial
  argument match of 'nr' to 'nrow'
complement: warning in matrix(mesh[case1.2, ], nr = n.case1.2): partial
  argument match of 'nr' to 'nrow'
complement: warning in matrix(matrix(mesh[case1.3, ], nr =
  n.case1.3)[case1.3.1, ], nr = n.case1.3.1): partial argument match of
  'nr' to 'nrow'
complement: warning in matrix(mesh[case1.3, ], nr = n.case1.3): partial
  argument match of 'nr' to 'nrow'
complement: warning in matrix(mesh[case2.1, ], nr = n.case2.1): partial
  argument match of 'nr' to 'nrow'
complement: warning in matrix(mesh[case2.2, ], nr = n.case2.2): partial
  argument match of 'nr' to 'nrow'
complement: warning in matrix(matrix(mesh[case2.3, ], nr =
  n.case2.3)[case2.3.1, ], nr = n.case2.3.1): partial argument match of
  'nr' to 'nrow'
complement: warning in matrix(mesh[case2.3, ], nr = n.case2.3): partial
  argument match of 'nr' to 'nrow'
complement: warning in matrix(nr = n.case.h, nc = 19): partial argument
  match of 'nr' to 'nrow'
complement: warning in matrix(nr = n.case.h, nc = 19): partial argument
  match of 'nc' to 'ncol'
delvor: warning in matrix(tri.info[, c("arc1", "node2", "node3")], nc =
  3, nr = 1): partial argument match of 'nr' to 'nrow'
delvor: warning in matrix(tri.info[, c("arc1", "node2", "node3")], nc =
  3, nr = 1): partial argument match of 'nc' to 'ncol'
delvor: warning in matrix(tri.info[, c("arc2", "node1", "node3")], nc =
  3, nr = 1): partial argument match of 'nr' to 'nrow'
delvor: warning in matrix(tri.info[, c("arc2", "node1", "node3")], nc =
  3, nr = 1): partial argument match of 'nc' to 'ncol'
delvor: warning in matrix(tri.info[, c("arc3", "node1", "node2")], nc =
  3, nr = 1): partial argument match of 'nr' to 'nrow'
delvor: warning in matrix(tri.info[, c("arc3", "node1", "node2")], nc =
  3, nr = 1): partial argument match of 'nc' to 'ncol'
koch: warning in matrix(nr = npoints, nc = 2): partial argument match
  of 'nr' to 'nrow'
koch: warning in matrix(nr = npoints, nc = 2): partial argument match
  of 'nc' to 'ncol'
koch: warning in matrix(c(cos(-pi/3), sin(-pi/3)), nr = length(index1),
  nc = 2, byrow = TRUE): partial argument match of 'nr' to 'nrow'
koch: warning in matrix(c(cos(-pi/3), sin(-pi/3)), nr = length(index1),
  nc = 2, byrow = TRUE): partial argument match of 'nc' to 'ncol'
koch: warning in matrix(c(-sin(-pi/3), cos(-pi/3)), nr =
  length(index1), nc = 2, byrow = TRUE): partial argument match of 'nr'
  to 'nrow'
koch: warning in matrix(c(-sin(-pi/3), cos(-pi/3)), nr =
  length(index1), nc = 2, byrow = TRUE): partial argument match of 'nc'
  to 'ncol'
rkoch: warning in matrix(nr = n, nc = 2): partial argument match of
  'nr' to 'nrow'
rkoch: warning in matrix(nr = n, nc = 2): partial argument match of
  'nc' to 'ncol'
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
* checking compiled code ... NOTE
File 'd:/Rcompile/CRANpkg/lib/2.15/alphahull/libs/i386/alphahull.dll':
  Found '_gfortran_st_write', possibly from 'write' (Fortran), 'print'
    (Fortran)
    Object: 'tripack.o'
File 'd:/Rcompile/CRANpkg/lib/2.15/alphahull/libs/x64/alphahull.dll':
  Found '_gfortran_st_write', possibly from 'write' (Fortran), 'print'
    (Fortran)
    Object: 'tripack.o'

Compiled code should not call functions which might terminate R nor
write to stdout/stderr instead of to the console.

See 'Writing portable packages' in the 'Writing R Extensions' manual.
* checking sizes of PDF files under 'inst/doc' ... OK
* checking installed files from 'inst/doc' ... NOTE
The following files are already in R: 'jss.bst', 'jss.cls'
Please remove them from your package.
* checking examples ...
** running examples for arch 'i386' ... OK
** running examples for arch 'x64' ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... OK
* checking re-building of vignette PDFs ... NOTE
Error in re-building vignettes:
  ...

Spatial Point Pattern Analysis Code in S-Plus
 
 Version 2 - Spatial and Space-Time analysis

deldir 0.0-19

     PLEASE NOTE:  The components "delsgs" and "summary" of the 
     object returned by deldir() are now DATA FRAMES rather than 
     matrices (as they were prior to release 0.0-18). 
     See help("deldir").
 
     PLEASE NOTE: The process for determining duplicated points
     has changed from that used in version 0.0-9 (and previously).

Warning: running command '"d:\compiler\texmf\miktex\bin\texi2dvi.exe" --quiet --pdf "alphahull.tex"  -I "d:/RCompile/recent/R-2.15.0/share/texmf/tex/latex" -I "d:/RCompile/recent/R-2.15.0/share/texmf/bibtex/bst"' had status 1
Error: running 'texi2dvi' on 'alphahull.tex' failed

LaTeX errors:
phahull.tex:76: LaTeX Error: You have run the document with pdflatex, but PSTri
cks
               requires latex->dvips->ps2pdf or alternatively the use
               of the package `auto-pst-pdf'. Then you can run
                 `pdflatex -shell-escape <file>' (TeX Live) 
Execution halted

* checking PDF version of manual ... OK
NOTE: There were 4 notes.
See
  'd:/Rcompile/CRANpkg/local/2.15/alphahull.Rcheck/00check.log'
for details.