* using log directory 'd:/Rcompile/CRANpkg/local/2.15/caspar.Rcheck'
* using R version 2.15.0 (2012-03-30)
* using platform: x86_64-pc-mingw32 (64-bit)
* using session charset: ISO8859-1
* checking for file 'caspar/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'caspar' version '1.0'
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... NOTE
As from R 2.14.0 all packages need a namespace.
One will be generated on installation, but it is better to handcraft a
NAMESPACE file: R CMD build will produce a suitable starting point.
CRAN requires a NAMESPACE file for all submissions.
* checking whether package 'caspar' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
File 'caspar/R/zzz.r':
  .First.lib calls:
    require(mvtnorm)

Package startup functions should not change the search path.
See section 'Good practice' in ?.onAttach.

caspar.engine: warning in matrix(0, nr = p, nc = p): partial argument
  match of 'nr' to 'nrow'
caspar.engine: warning in matrix(0, nr = p, nc = p): partial argument
  match of 'nc' to 'ncol'
caspar.grid: warning in matrix(0, nr = length(kp.vec), nc =
  length(mix.vec)): partial argument match of 'nr' to 'nrow'
caspar.grid: warning in matrix(0, nr = length(kp.vec), nc =
  length(mix.vec)): partial argument match of 'nc' to 'ncol'
caspar.grid: warning in matrix(0, nr = p, nc = p): partial argument
  match of 'nr' to 'nrow'
caspar.grid: warning in matrix(0, nr = p, nc = p): partial argument
  match of 'nc' to 'ncol'
demo.hiv: no visible binding for global variable 'HIVDAT1APV'
demo.hiv: no visible binding for global variable 'HIVDAT2ATV'
demo.hiv: no visible binding for global variable 'HIVDAT3IDV'
demo.hiv: no visible binding for global variable 'HIVDAT4LPV'
demo.hiv: no visible binding for global variable 'HIVDAT5NFV'
demo.hiv: no visible binding for global variable 'HIVDAT6RTV'
demo.hiv: no visible binding for global variable 'HIVDAT7SQV'
simulateCasparData: warning in matrix(rnorm(n * p), nr = n, nc = p):
  partial argument match of 'nr' to 'nrow'
simulateCasparData: warning in matrix(rnorm(n * p), nr = n, nc = p):
  partial argument match of 'nc' to 'ncol'
simulateCasparData: warning in matrix(cor, nr = sz, nc = sz): partial
  argument match of 'nr' to 'nrow'
simulateCasparData: warning in matrix(cor, nr = sz, nc = sz): partial
  argument match of 'nc' to 'ncol'
* checking Rd files ... NOTE
prepare_Rd: caspar-package.Rd:36-37: Dropping empty section \seealso
prepare_Rd: caspar-package.Rd:38-39: Dropping empty section \examples
prepare_Rd: caspar.engine.Rd:53-55: Dropping empty section \details
prepare_Rd: caspar.engine.Rd:56-62: Dropping empty section \value
prepare_Rd: caspar.engine.Rd:69-71: Dropping empty section \note
prepare_Rd: caspar.engine.Rd:66-68: Dropping empty section \author
prepare_Rd: caspar.engine.Rd:63-65: Dropping empty section \references
prepare_Rd: caspar.engine.Rd:75-77: Dropping empty section \seealso
prepare_Rd: caspar.engine.Rd:78-79: Dropping empty section \examples
prepare_Rd: caspar.grid.Rd:44-46: Dropping empty section \details
prepare_Rd: caspar.grid.Rd:47-53: Dropping empty section \value
prepare_Rd: caspar.grid.Rd:60-62: Dropping empty section \note
prepare_Rd: caspar.grid.Rd:57-59: Dropping empty section \author
prepare_Rd: caspar.grid.Rd:54-56: Dropping empty section \references
prepare_Rd: caspar.grid.Rd:66-68: Dropping empty section \seealso
prepare_Rd: caspar.grid.Rd:69-70: Dropping empty section \examples
prepare_Rd: caspar.main.Rd:65-67: Dropping empty section \note
prepare_Rd: caspar.main.Rd:62-64: Dropping empty section \author
prepare_Rd: caspar.main.Rd:59-61: Dropping empty section \references
prepare_Rd: caspar.main.Rd:71-73: Dropping empty section \seealso
prepare_Rd: casparCV.Rd:49-51: Dropping empty section \details
prepare_Rd: casparCV.Rd:52-58: Dropping empty section \value
prepare_Rd: casparCV.Rd:65-67: Dropping empty section \note
prepare_Rd: casparCV.Rd:62-64: Dropping empty section \author
prepare_Rd: casparCV.Rd:59-61: Dropping empty section \references
prepare_Rd: casparCV.Rd:71-73: Dropping empty section \seealso
prepare_Rd: casparCV.Rd:74-75: Dropping empty section \examples
prepare_Rd: col2cov.Rd:23-25: Dropping empty section \details
prepare_Rd: col2cov.Rd:26-32: Dropping empty section \value
prepare_Rd: col2cov.Rd:39-41: Dropping empty section \note
prepare_Rd: col2cov.Rd:36-38: Dropping empty section \author
prepare_Rd: col2cov.Rd:33-35: Dropping empty section \references
prepare_Rd: col2cov.Rd:45-47: Dropping empty section \seealso
prepare_Rd: col2cov.Rd:48-49: Dropping empty section \examples
prepare_Rd: cov2grid.Rd:23-25: Dropping empty section \details
prepare_Rd: cov2grid.Rd:26-32: Dropping empty section \value
prepare_Rd: cov2grid.Rd:39-41: Dropping empty section \note
prepare_Rd: cov2grid.Rd:36-38: Dropping empty section \author
prepare_Rd: cov2grid.Rd:33-35: Dropping empty section \references
prepare_Rd: cov2grid.Rd:45-47: Dropping empty section \seealso
prepare_Rd: cov2grid.Rd:48-49: Dropping empty section \examples
prepare_Rd: demo.caspar.Rd:15-17: Dropping empty section \details
prepare_Rd: demo.caspar.Rd:18-24: Dropping empty section \value
prepare_Rd: demo.caspar.Rd:31-33: Dropping empty section \note
prepare_Rd: demo.caspar.Rd:28-30: Dropping empty section \author
prepare_Rd: demo.caspar.Rd:25-27: Dropping empty section \references
prepare_Rd: demo.caspar.Rd:37-39: Dropping empty section \seealso
prepare_Rd: demo.hiv.Rd:39-41: Dropping empty section \note
prepare_Rd: demo.hiv.Rd:36-38: Dropping empty section \author
prepare_Rd: demo.hiv.Rd:33-35: Dropping empty section \references
prepare_Rd: demo.hiv.Rd:45-47: Dropping empty section \seealso
prepare_Rd: simulateCasparData.Rd:53-55: Dropping empty section \details
prepare_Rd: simulateCasparData.Rd:56-62: Dropping empty section \value
prepare_Rd: simulateCasparData.Rd:69-71: Dropping empty section \note
prepare_Rd: simulateCasparData.Rd:66-68: Dropping empty section \author
prepare_Rd: simulateCasparData.Rd:63-65: Dropping empty section \references
prepare_Rd: simulateCasparData.Rd:75-77: Dropping empty section \seealso
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking for portable compilation flags in Makevars ... OK
* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
* checking compiled code ... NOTE
File 'd:/Rcompile/CRANpkg/lib/2.15/caspar/libs/i386/caspar.dll':
  Found 'printf', possibly from 'printf' (C)
    Object: 'caspar-i-cv-dmat.o'
  Found 'putchar', possibly from 'putchar' (C)
    Object: 'caspar-i-cv-dmat.o'
File 'd:/Rcompile/CRANpkg/lib/2.15/caspar/libs/x64/caspar.dll':
  Found 'printf', possibly from 'printf' (C)
    Object: 'caspar-i-cv-dmat.o'
  Found 'putchar', possibly from 'putchar' (C)
    Object: 'caspar-i-cv-dmat.o'

Compiled code should not call functions which might terminate R nor
write to stdout/stderr instead of to the console.

See 'Writing portable packages' in the 'Writing R Extensions' manual.
* checking examples ...
** running examples for arch 'i386' ... OK
** running examples for arch 'x64' ... OK
* checking PDF version of manual ... OK
NOTE: There were 4 notes.
See
  'd:/Rcompile/CRANpkg/local/2.15/caspar.Rcheck/00check.log'
for details.