* using log directory 'd:/Rcompile/CRANpkg/local/2.15/degreenet.Rcheck' * using R version 2.15.0 (2012-03-30) * using platform: x86_64-pc-mingw32 (64-bit) * using session charset: ISO8859-1 * checking for file 'degreenet/DESCRIPTION' ... OK * this is package 'degreenet' version '1.1' * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... NOTE As from R 2.14.0 all packages need a namespace. One will be generated on installation, but it is better to handcraft a NAMESPACE file: R CMD build will produce a suitable starting point. CRAN requires a NAMESPACE file for all submissions. * checking whether package 'degreenet' can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking for portable file names ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * loading checks for arch 'i386' ** checking whether the package can be loaded ... OK ** checking whether the package can be loaded with stated dependencies ... OK ** checking whether the package can be unloaded cleanly ... OK * loading checks for arch 'x64' ** checking whether the package can be loaded ... OK ** checking whether the package can be loaded with stated dependencies ... OK ** checking whether the package can be unloaded cleanly ... OK * checking for unstated dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... NOTE File 'degreenet/R/zzz.R': .First.lib calls: cat("\ndegreenet:", info[, "Title"], "\nVersion", info[, "Version"], "created on", info[, "Date"], "\n") cat(paste("copyright (c) 2003, Mark S. Handcock, University of California-Los Angeles\n", " David R. Hunter, Penn State University\n", " Carter T. Butts, University of California-Irvine\n", " Steven M. Goodreau, University of Washington\n", " Pavel N. Krivitsky, Carnegie Mellon University\n", " Martina Morris, University of Washington\n", sep = "")) cat("Type help(package=\"degreenet\") to get started.\n\n") cat("Based on \"statnet\" project software (http://statnet.org).\n", "For license and citation information see http://statnet.org/attribution\n", "or type citation(\"degreenet\").\n") Package startup functions should use 'packageStartupMessage' to generate messages. See section 'Good practice' in ?.onAttach. dpln.refined: warning in gauss.hermite(points, iter = 1000): partial argument match of 'iter' to 'iterlim' dpln1: warning in gauss.hermite(points, iter = 1000): partial argument match of 'iter' to 'iterlim' is.psd: warning in eigen(V, sym = TRUE, only.values = TRUE): partial argument match of 'sym' to 'symmetric' llggeo: warning in pgeom(q = 100 - cutoff, prob = 1/v[1], lower = TRUE): partial argument match of 'lower' to 'lower.tail' llggeo: warning in pgeom(q = 20 - cutoff, prob = 1/v[1], lower = TRUE): partial argument match of 'lower' to 'lower.tail' llggeo: warning in pgeom(q = 100 - cutoff, prob = 1/v[1], lower = FALSE, log.p = TRUE): partial argument match of 'lower' to 'lower.tail' llggeo: warning in pgeom(q = 4 - cutoff, prob = 1/v[1], lower = TRUE): partial argument match of 'lower' to 'lower.tail' llgnb: warning in pnbinom(q = 100 - cutoff, size = v[1] * v[2], prob = v[2], lower = TRUE): partial argument match of 'lower' to 'lower.tail' llgnb: warning in pnbinom(q = 20 - cutoff, size = v[1] * v[2], prob = v[2], lower = TRUE): partial argument match of 'lower' to 'lower.tail' llgnb: warning in pnbinom(q = 100 - cutoff, size = v[1] * v[2], prob = v[2], lower = FALSE, log.p = TRUE): partial argument match of 'lower' to 'lower.tail' llgnb: warning in pnbinom(q = 4 - cutoff, size = v[1] * v[2], prob = v[2], lower = TRUE): partial argument match of 'lower' to 'lower.tail' * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of 'data' directory ... OK * checking data for non-ASCII characters ... OK * checking data for ASCII and uncompressed saves ... OK * checking line endings in C/C++/Fortran sources/headers ... OK * checking line endings in Makefiles ... OK * checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK * checking compiled code ... OK * checking examples ... ** running examples for arch 'i386' ... OK ** running examples for arch 'x64' ... OK * checking PDF version of manual ... OK NOTE: There were 2 notes. See 'd:/Rcompile/CRANpkg/local/2.15/degreenet.Rcheck/00check.log' for details.