* using log directory 'd:/Rcompile/CRANpkg/local/2.15/epitools.Rcheck'
* using R version 2.15.0 (2012-03-30)
* using platform: x86_64-pc-mingw32 (64-bit)
* using session charset: ISO8859-1
* checking for file 'epitools/DESCRIPTION' ... OK
* this is package 'epitools' version '0.5-6'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking whether package 'epitools' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
colorbrewer.display: warning in matrix(rep(1:nex, rep(nclass, nex)), nr
  = nclass, nc = nex): partial argument match of 'nr' to 'nrow'
colorbrewer.display: warning in matrix(rep(1:nex, rep(nclass, nex)), nr
  = nclass, nc = nex): partial argument match of 'nc' to 'ncol'
colorbrewer.display: warning in matrix(rep(1:nclass, nex), nr = nclass,
  nc = nex): partial argument match of 'nr' to 'nrow'
colorbrewer.display: warning in matrix(rep(1:nclass, nex), nr = nclass,
  nc = nex): partial argument match of 'nc' to 'ncol'
colorbrewer.display: warning in rgb(cd.tn[, "red"], cd.tn[, "green"],
  cd.tn[, "blue"], max = 255): partial argument match of 'max' to
  'maxColorValue'
colorbrewer.palette: warning in rgb(cd2$red, cd2$green, cd2$blue, max =
  255): partial argument match of 'max' to 'maxColorValue'
colors.plot: warning in axis(1, at = 1:30, label = 1:30, cex.axis =
  cex.axis, tick = FALSE): partial argument match of 'label' to
  'labels'
colors.plot: warning in axis(2, at = 1:22, label = 1:22, cex.axis =
  cex.axis, tick = FALSE, las = 1): partial argument match of 'label'
  to 'labels'
or.midp : mue: warning in fisher.test(mm, or = or, alt = "l"): partial
  argument match of 'alt' to 'alternative'
or.midp : mue: warning in fisher.test(x = x, or = or, alt = "g"):
  partial argument match of 'alt' to 'alternative'
or.midp : midp: warning in fisher.test(mm, or = or, alt = "l"): partial
  argument match of 'alt' to 'alternative'
or.midp : midp: warning in fisher.test(mm, or = or, alt = "g"): partial
  argument match of 'alt' to 'alternative'
ormidp.test: warning in fisher.test(x, or = or, alt = "l"): partial
  argument match of 'alt' to 'alternative'
ormidp.test: warning in fisher.test(x, or = or, alt = "g"): partial
  argument match of 'alt' to 'alternative'
table.margins: warning in matrix(t(z), nr = dd[2]): partial argument
  match of 'nr' to 'nrow'
table.margins: warning in matrix(t(z2), nr = prod(dd[-c(1, 2)])):
  partial argument match of 'nr' to 'nrow'
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... WARNING
Warning: parse error in file 'epitools-Ex.R':
5: unexpected numeric constant
79: dth60 <- scan()
80: 141 926
       ^
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
** running examples for arch 'x64' ... OK
* checking PDF version of manual ... OK
WARNING: There was 1 warning.
NOTE: There was 1 note.
See
  'd:/Rcompile/CRANpkg/local/2.15/epitools.Rcheck/00check.log'
for details.