* using log directory 'd:/Rcompile/CRANpkg/local/2.15/extRemes.Rcheck' * using R version 2.15.0 (2012-03-30) * using platform: x86_64-pc-mingw32 (64-bit) * using session charset: ISO8859-1 * checking for file 'extRemes/DESCRIPTION' ... OK * this is package 'extRemes' version '1.64' * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking whether package 'extRemes' can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking for portable file names ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * loading checks for arch 'i386' ** checking whether the package can be loaded ... OK ** checking whether the package can be loaded with stated dependencies ... OK ** checking whether the package can be unloaded cleanly ... OK ** checking whether the namespace can be loaded with stated dependencies ... OK ** checking whether the namespace can be unloaded cleanly ... OK * loading checks for arch 'x64' ** checking whether the package can be loaded ... OK ** checking whether the package can be loaded with stated dependencies ... OK ** checking whether the package can be unloaded cleanly ... OK ** checking whether the namespace can be loaded with stated dependencies ... OK ** checking whether the namespace can be unloaded cleanly ... OK * checking for unstated dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... NOTE DataSummaryGUI: warning in ls(all = TRUE, name = ".GlobalEnv"): partial argument match of 'all' to 'all.names' affine.gui : refresh: no visible binding for global variable 'extRemesData' affine.gui : affine.trans: no visible binding for global variable 'cnames' affine.gui : affine.trans: no visible binding for global variable 'cols.selected' affine.gui: warning in ls(all = TRUE, name = ".GlobalEnv"): partial argument match of 'all' to 'all.names' affine.gui: no visible binding for global variable 'extRemesData' affine.gui: no visible binding for global variable 'dd' decluster.gui : refresh: no visible binding for global variable 'extRemesData' decluster.gui : submit: no visible binding for global variable 'cnames' decluster.gui : submit: no visible binding for global variable 'tmp.data' decluster.gui : submit: no visible binding for global variable 'cluster.by.val' decluster.gui : submit: no visible binding for global variable 'cols.selected' decluster.gui : submit: no visible binding for global variable 'out' decluster.gui: warning in ls(all = TRUE, name = ".GlobalEnv"): partial argument match of 'all' to 'all.names' decluster.gui: no visible binding for global variable 'extRemesData' decluster.gui: no visible binding for global variable 'dd' extremalind.gui : submit: no visible binding for global variable 'look' extremalind.gui: warning in ls(all = TRUE, name = ".GlobalEnv"): partial argument match of 'all' to 'all.names' extremes.gui : ev.dataexists: warning in ls(all = TRUE, pos = ".GlobalEnv"): partial argument match of 'all' to 'all.names' fitdiag.gui: warning in ls(all = TRUE, name = ".GlobalEnv"): partial argument match of 'all' to 'all.names' fitsummary.gui: warning in ls(all = TRUE, name = ".GlobalEnv"): partial argument match of 'all' to 'all.names' gev.rlci: no visible global function definition for 'describe' gev.rlci : gev.plik: no visible global function definition for 'gum.lik' gevf.gui : refresh: no visible binding for global variable 'extRemesData' gevf.gui : redolists: no visible binding for global variable 'extRemesData' gevf.gui : submit: no visible binding for global variable 'cov.selected' gevf.gui : submit: no visible binding for global variable 'dat.cols' gevf.gui : submit: no visible binding for global variable 'mu.cov.cols' gevf.gui : submit: no visible binding for global variable 'sig.cov.cols' gevf.gui : submit: no visible binding for global variable 'gam.cov.cols' gevf.gui : submit: no visible binding for global variable 'mu' gevf.gui : submit: no visible binding for global variable 'sigma' gevf.gui : submit: no visible binding for global variable 'xi' gevf.gui : submit: no visible binding for global variable 'Dev' gevf.gui : submit: no visible binding for global variable 'fit.obj' gevf.gui : submit: no visible binding for global variable 'cov.names' gevf.gui: warning in ls(all = TRUE, name = ".GlobalEnv"): partial argument match of 'all' to 'all.names' gevf.gui: no visible binding for global variable 'extRemesData' gevparamCI.gui : submit: no visible binding for global variable 'fit' gevparamCI.gui : submit: no visible binding for global variable 'est.rl' gevparamCI.gui : submit: no visible binding for global variable 'ci' gevparamCI.gui: warning in ls(all = TRUE, name = ".GlobalEnv"): partial argument match of 'all' to 'all.names' gpd.parameterCI: warning in matrix(c((la * (1 - la))/z$n, 0, 0, 0, mat[1, 1], mat[1, 2], 0, mat[2, 1], mat[2, 2]), nc = 3): partial argument match of 'nc' to 'ncol' gpd.rl2: warning in matrix(c((la * (1 - la))/n, 0, 0, 0, mat[1, 1], mat[1, 2], 0, mat[2, 1], mat[2, 2]), nc = 3): partial argument match of 'nc' to 'ncol' gpd.rlci: no visible binding for global variable 'xlow' gpd.rlci: no visible binding for global variable 'xup' gpdf.gui : refresh: no visible binding for global variable 'extRemesData' gpdf.gui : redolists: no visible binding for global variable 'extRemesData' gpdf.gui : submit: no visible binding for global variable 'cov.selected' gpdf.gui : submit: no visible binding for global variable 'dat.cols' gpdf.gui : submit: no visible binding for global variable 'sig.cov.cols' gpdf.gui : submit: no visible binding for global variable 'gam.cov.cols' gpdf.gui : submit: no visible binding for global variable 'sigma' gpdf.gui : submit: no visible binding for global variable 'xi' gpdf.gui : submit: no visible binding for global variable 'Dev' gpdf.gui : submit: no visible binding for global variable 'fit.obj' gpdf.gui : submit: no visible binding for global variable 'cov.names' gpdf.gui: warning in ls(all = TRUE, name = ".GlobalEnv"): partial argument match of 'all' to 'all.names' gpdf.gui: no visible binding for global variable 'extRemesData' gpdfitrange.gui: warning in ls(all = TRUE, name = ".GlobalEnv"): partial argument match of 'all' to 'all.names' gpdfitrange.gui: no visible binding for global variable 'extRemesData' gpdparamCI.gui : submit: no visible binding for global variable 'fit' gpdparamCI.gui : submit: no visible binding for global variable 'ci' gpdparamCI.gui: warning in ls(all = TRUE, name = ".GlobalEnv"): partial argument match of 'all' to 'all.names' gpdsim.gui : generate: no visible binding for global variable 'gpd.sim' histogram.gui: warning in ls(all = TRUE, name = ".GlobalEnv"): partial argument match of 'all' to 'all.names' indicatorTransform.gui : refresh: no visible binding for global variable 'extRemesData' indicatorTransform.gui : indicator.trans: no visible binding for global variable 'cnames' indicatorTransform.gui : indicator.trans: no visible binding for global variable 'cols.selected' indicatorTransform.gui : indicator.trans: no visible binding for global variable 'newnames' indicatorTransform.gui: warning in ls(all = TRUE, name = ".GlobalEnv"): partial argument match of 'all' to 'all.names' indicatorTransform.gui: no visible binding for global variable 'extRemesData' indicatorTransform.gui: no visible binding for global variable 'dd' llhrt.gui : submit: no visible binding for global variable 'n0' llhrt.gui : submit: no visible binding for global variable 'n1' llhrt.gui : submit: no visible binding for global variable 'dd' llhrt.gui : submit: no visible binding for global variable 'out' llhrt.gui: warning in ls(all = TRUE, name = ".GlobalEnv"): partial argument match of 'all' to 'all.names' logdr.gui : refresh: no visible binding for global variable 'extRemesData' logdr.gui : ldr.trans: no visible binding for global variable 'cnames' logdr.gui : ldr.trans: no visible binding for global variable 'cols.selected' logdr.gui: warning in ls(all = TRUE, name = ".GlobalEnv"): partial argument match of 'all' to 'all.names' logdr.gui: no visible binding for global variable 'extRemesData' logdr.gui: no visible binding for global variable 'dd' logtrans.gui : refresh: no visible binding for global variable 'extRemesData' logtrans.gui : log.trans: no visible binding for global variable 'cnames' logtrans.gui : log.trans: no visible binding for global variable 'cols.selected' logtrans.gui: warning in ls(all = TRUE, name = ".GlobalEnv"): partial argument match of 'all' to 'all.names' logtrans.gui: no visible binding for global variable 'extRemesData' logtrans.gui: no visible binding for global variable 'dd' mrlplot.gui : submit: no visible binding for global variable 'var.name' mrlplot.gui: warning in ls(all = TRUE, name = ".GlobalEnv"): partial argument match of 'all' to 'all.names' negtrans.gui : refresh: no visible binding for global variable 'extRemesData' negtrans.gui : neg.trans: no visible binding for global variable 'cnames' negtrans.gui : neg.trans: no visible binding for global variable 'cols.selected' negtrans.gui: warning in ls(all = TRUE, name = ".GlobalEnv"): partial argument match of 'all' to 'all.names' negtrans.gui: no visible binding for global variable 'extRemesData' negtrans.gui: no visible binding for global variable 'dd' poisson.gui : submit: no visible binding for global variable 'lambda' poisson.gui : submit: no visible binding for global variable 'sigma2' poisson.gui : submit: no visible binding for global variable 'chisqtest' poisson.gui : submit: no visible binding for global variable 'm1' poisson.gui : submit: no visible binding for global variable 'dd' poisson.gui : submit: no visible binding for global variable 'cnames' poisson.gui : submit: warning in parse(tex = mod.fit.cmd): partial argument match of 'tex' to 'text' poisson.gui : submit: no visible binding for global variable 'mod.fit' poisson.gui : refresh: no visible binding for global variable 'extRemesData' poisson.gui : redolists: no visible binding for global variable 'extRemesData' poisson.gui: warning in ls(all = TRUE, name = ".GlobalEnv"): partial argument match of 'all' to 'all.names' poisson.gui: no visible binding for global variable 'extRemesData' ppfit.gui : refresh: no visible binding for global variable 'extRemesData' ppfit.gui : redolists: no visible binding for global variable 'extRemesData' ppfit.gui : submit: no visible binding for global variable 'cov.selected' ppfit.gui : submit: no visible binding for global variable 'dat.cols' ppfit.gui : submit: no visible binding for global variable 'fit' ppfit.gui : submit: no visible binding for global variable 'cov.names' ppfit.gui: warning in ls(all = TRUE, name = ".GlobalEnv"): partial argument match of 'all' to 'all.names' ppfit.gui: no visible binding for global variable 'extRemesData' ppfitrange.gui: warning in ls(all = TRUE, name = ".GlobalEnv"): partial argument match of 'all' to 'all.names' ppfitrange.gui: no visible binding for global variable 'extRemesData' return.level: warning in matrix(c((la * (1 - la))/n, 0, 0, 0, mat[1, 1], mat[1, 2], 0, mat[2, 1], mat[2, 2]), nc = 3): partial argument match of 'nc' to 'ncol' rl.gpd.fit: warning in matrix(c((la * (1 - la))/n, 0, 0, 0, mat[1, 1], mat[1, 2], 0, mat[2, 1], mat[2, 2]), nc = 3): partial argument match of 'nc' to 'ncol' rlargf.gui : refresh: no visible binding for global variable 'extRemesData' rlargf.gui : redolists: no visible binding for global variable 'extRemesData' rlargf.gui : submit: no visible binding for global variable 'cov.selected' rlargf.gui : submit: no visible binding for global variable 'dat.cols' rlargf.gui : submit: no visible binding for global variable 'mu.cov.cols' rlargf.gui : submit: no visible binding for global variable 'sig.cov.cols' rlargf.gui : submit: no visible binding for global variable 'gam.cov.cols' rlargf.gui : submit: no visible binding for global variable 'fit' rlargf.gui : submit: no visible binding for global variable 'cov.names' rlargf.gui: warning in ls(all = TRUE, name = ".GlobalEnv"): partial argument match of 'all' to 'all.names' rlargf.gui: no visible binding for global variable 'extRemesData' rlplot: warning in matrix(c((la * (1 - la))/n, 0, 0, 0, mat[1, 1], mat[1, 2], 0, mat[2, 1], mat[2, 2]), nc = 3): partial argument match of 'nc' to 'ncol' rlplot.gui: warning in ls(all = TRUE, name = ".GlobalEnv"): partial argument match of 'all' to 'all.names' scatterplot.gui: warning in ls(all = TRUE, name = ".GlobalEnv"): partial argument match of 'all' to 'all.names' scrubber.gui : submit: no visible binding for global variable 'dd' scrubber.gui : submit: no visible binding for global variable 'tmp.names' scrubber.gui: warning in ls(all = TRUE, name = ".GlobalEnv"): partial argument match of 'all' to 'all.names' scrubber.gui: no visible binding for global variable 'extRemesData' stats2: no visible global function definition for 'cat.to.list' trigtrans.gui : refresh: no visible binding for global variable 'extRemesData' trigtrans.gui : trig.trans: no visible binding for global variable 'cnames' trigtrans.gui : trig.trans: no visible binding for global variable 'cols.selected' trigtrans.gui: warning in ls(all = TRUE, name = ".GlobalEnv"): partial argument match of 'all' to 'all.names' trigtrans.gui: no visible binding for global variable 'extRemesData' trigtrans.gui: no visible binding for global variable 'dd' * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of 'data' directory ... OK * checking data for non-ASCII characters ... OK * checking data for ASCII and uncompressed saves ... OK * checking examples ... ** running examples for arch 'i386' ... OK ** running examples for arch 'x64' ... OK * checking PDF version of manual ... OK NOTE: There was 1 note. See 'd:/Rcompile/CRANpkg/local/2.15/extRemes.Rcheck/00check.log' for details.