* using log directory 'd:/Rcompile/CRANpkg/local/2.15/igraph.Rcheck'
* using R version 2.15.0 (2012-03-30)
* using platform: x86_64-pc-mingw32 (64-bit)
* using session charset: ISO8859-1
* checking for file 'igraph/DESCRIPTION' ... OK
* this is package 'igraph' version '0.5.5-4'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking whether package 'igraph' can be installed ... OK
* checking installed package size ... NOTE
  installed size is  9.7Mb
  sub-directories of 1Mb or more:
    libs   8.8Mb
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
.tkigraph.load: warning in ls(all = TRUE): partial argument match of
  'all' to 'all.names'
.tkigraph.motifs.draw: warning in matrix(c(1, 1, 0, 0, 2, 0), nc = 2,
  byrow = TRUE): partial argument match of 'nc' to 'ncol'
.tkigraph.motifs.draw: warning in matrix(c(0, 1, 1, 1, 0, 0, 1, 0), nc
  = 2, byrow = TRUE): partial argument match of 'nc' to 'ncol'
.tkigraph.motifs.draw: warning in matrix(1:(rows * cols), nr = rows,
  byrow = TRUE): partial argument match of 'nr' to 'nrow'
.tkigraph.motifs.draw: warning in graph.isocreate(read$size, i, dir =
  read$dir): partial argument match of 'dir' to 'directed'
.tkigraph.motifs.find: warning in matrix(c(1, 1, 0, 0, 2, 0), nc = 2,
  byrow = TRUE): partial argument match of 'nc' to 'ncol'
.tkigraph.motifs.find: warning in matrix(c(0, 1, 1, 1, 0, 0, 1, 0), nc
  = 2, byrow = TRUE): partial argument match of 'nc' to 'ncol'
.tkigraph.motifs.find: warning in matrix(1:(rows * cols), nr = rows,
  byrow = TRUE): partial argument match of 'nr' to 'nrow'
.tkigraph.motifs.find: warning in graph.isocreate(read$size, i, dir =
  is.directed(graphs[[gnos]])): partial argument match of 'dir' to
  'directed'
.tkplot.update.edge: warning in matrix(c(xx, yy, xx + 20, yy - 10, xx +
  30, yy, xx + 20, yy + 10, xx, yy), nc = 2, byrow = TRUE): partial
  argument match of 'nc' to 'ncol'
alpha.centrality: warning in matrix(exo, nc = 1): partial argument
  match of 'nc' to 'ncol'
get.adjacency.dense: warning in matrix(0, nr = vcount(graph), nc =
  vcount(graph)): partial argument match of 'nr' to 'nrow'
get.adjacency.dense: warning in matrix(0, nr = vcount(graph), nc =
  vcount(graph)): partial argument match of 'nc' to 'ncol'
get.edgelist: warning in matrix(.Call("R_igraph_get_edgelist", graph,
  TRUE, PACKAGE = "igraph"), nc = 2): partial argument match of 'nc' to
  'ncol'
get.edgelist: warning in matrix(V(graph)$name[res + 1], nc = 2):
  partial argument match of 'nc' to 'ncol'
get.edges: warning in matrix(res, nc = 2, byrow = TRUE): partial
  argument match of 'nc' to 'ncol'
graph.data.frame: warning in matrix(c(ids[from], ids[to]), nc = 2):
  partial argument match of 'nc' to 'ncol'
i.get.layout: warning in matrix(unlist(get.vertex.attribute(graph,
  substring(layout, 3))), nr = vcount(graph), byrow = TRUE): partial
  argument match of 'nr' to 'nrow'
layout.drl: warning in matrix(runif(vcount(graph) * 2), nc = 2):
  partial argument match of 'nc' to 'ncol'
plot.igraph : loop: warning in matrix(c(x0, y0, x0 + 0.4, y0 + 0.2, x0
  + 0.4, y0 - 0.2, x0, y0), nc = 2, byrow = TRUE): partial argument
  match of 'nc' to 'ncol'
print.igraph.es: warning in matrix(V(graph)$name[el + 1], nc = 2):
  partial argument match of 'nc' to 'ncol'
tkplot : <anonymous> : <anonymous>: warning in tkplot.rotate(tkp.id,
  deg = deg): partial argument match of 'deg' to 'degree'
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking for portable compilation flags in Makevars ... OK
* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
* checking compiled code ... NOTE
File 'd:/Rcompile/CRANpkg/lib/2.15/igraph/libs/i386/igraph.dll':
  Found '_ZSt4cout', possibly from 'std::cout' (C++)
    Objects: 'DensityGrid.o', 'DensityGrid_3d.o', 'drl_graph.o',
      'drl_parse.o'
  Found 'abort', possibly from 'abort' (C), 'runtime' (Fortran)
    Object: 'error.o'
  Found 'exit', possibly from 'exit' (C), 'stop' (Fortran)
    Objects: 'DensityGrid.o', 'DensityGrid_3d.o', 'drl_graph.o',
      'drl_parse.o', 'foreign-gml-lexer.o', 'foreign-lgl-lexer.o',
      'foreign-ncol-lexer.o', 'foreign-pajek-lexer.o',
      'gengraph_degree_sequence.o', 'gengraph_graph_molloy_optimized.o'
  Found 'printf', possibly from 'printf' (C)
    Objects: 'bfgs.o', 'dlamch.o', 'gengraph_degree_sequence.o',
      'pottsmodel_2.o', 'revolver_ml_cit.o', 'xerbla.o'
  Found 'putchar', possibly from 'putchar' (C)
    Object: 'revolver_ml_cit.o'
  Found 'puts', possibly from 'printf' (C), 'puts' (C)
    Objects: 'bfgs.o', 'dlamch.o'
File 'd:/Rcompile/CRANpkg/lib/2.15/igraph/libs/x64/igraph.dll':
  Found '_ZSt4cout', possibly from 'std::cout' (C++)
    Objects: 'DensityGrid.o', 'DensityGrid_3d.o', 'drl_graph.o',
      'drl_parse.o'
  Found 'abort', possibly from 'abort' (C), 'runtime' (Fortran)
    Object: 'error.o'
  Found 'exit', possibly from 'exit' (C), 'stop' (Fortran)
    Objects: 'DensityGrid.o', 'DensityGrid_3d.o', 'drl_graph.o',
      'drl_parse.o', 'foreign-gml-lexer.o', 'foreign-lgl-lexer.o',
      'foreign-ncol-lexer.o', 'foreign-pajek-lexer.o',
      'gengraph_degree_sequence.o', 'gengraph_graph_molloy_optimized.o'
  Found 'printf', possibly from 'printf' (C)
    Objects: 'bfgs.o', 'dlamch.o', 'gengraph_degree_sequence.o',
      'pottsmodel_2.o', 'revolver_ml_cit.o', 'xerbla.o'
  Found 'putchar', possibly from 'putchar' (C)
    Object: 'revolver_ml_cit.o'
  Found 'puts', possibly from 'printf' (C), 'puts' (C)
    Objects: 'bfgs.o', 'dlamch.o'

Compiled code should not call functions which might terminate R nor
write to stdout/stderr instead of to the console.

See 'Writing portable packages' in the 'Writing R Extensions' manual.
* checking examples ...
** running examples for arch 'i386' ... OK
** running examples for arch 'x64' ... OK
* checking PDF version of manual ... OK
NOTE: There were 3 notes.
See
  'd:/Rcompile/CRANpkg/local/2.15/igraph.Rcheck/00check.log'
for details.