* using log directory 'd:/Rcompile/CRANpkg/local/2.15/kinship2.Rcheck'
* using R version 2.15.0 (2012-03-30)
* using platform: x86_64-pc-mingw32 (64-bit)
* using session charset: ISO8859-1
* checking for file 'kinship2/DESCRIPTION' ... OK
* this is package 'kinship2' version '1.3.3'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking whether package 'kinship2' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
besthint: warning in align.pedigree(ped, packed = TRUE, align = TRUE,
  width = 8, hint = newhint): partial argument match of 'hint' to
  'hints'
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking sizes of PDF files under 'inst/doc' ... OK
* checking installed files from 'inst/doc' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
** running examples for arch 'x64' ... OK
* checking for unstated dependencies in tests ... OK
* checking tests ...
** running tests for arch 'i386' OK
  Running 'failure.R'
  Comparing 'failure.Rout' to 'failure.Rout.save' ...4a5,11
> 
> Attaching package: 'Matrix'
> 
> The following object(s) are masked from 'package:base':
> 
>     det
> 
  Running 'kin1.R'
  Comparing 'kin1.Rout' to 'kin1.Rout.save' ...6a7,13
> 
> Attaching package: 'Matrix'
> 
> The following object(s) are masked from 'package:base':
> 
>     det
> 
  Running 'makefam.R'
  Comparing 'makefam.Rout' to 'makefam.Rout.save' ...3a4,10
> 
> Attaching package: 'Matrix'
> 
> The following object(s) are masked from 'package:base':
> 
>     det
> 
  Running 'subscript.R'
  Comparing 'subscript.Rout' to 'subscript.Rout.save' ...6a7,13
> 
> Attaching package: 'Matrix'
> 
> The following object(s) are masked from 'package:base':
> 
>     det
> 
  Running 'test.pedigree.legend.R'
  Comparing 'test.pedigree.legend.Rout' to 'test.pedigree.legend.Rout.save' ...6a7,13
> 
> Attaching package: 'Matrix'
> 
> The following object(s) are masked from 'package:base':
> 
>     det
> 
  Running 'test.pedigree.shrink.R'
  Comparing 'test.pedigree.shrink.Rout' to 'test.pedigree.shrink.Rout.save' ...10a11,17
> 
> Attaching package: 'Matrix'
> 
> The following object(s) are masked from 'package:base':
> 
>     det
> 
  Running 'test.pedigree.trim.R'
  Comparing 'test.pedigree.trim.Rout' to 'test.pedigree.trim.Rout.save' ...3a4,10
> 
> Attaching package: 'Matrix'
> 
> The following object(s) are masked from 'package:base':
> 
>     det
> 
  Running 'test.pedigree.unrelated.R'
  Comparing 'test.pedigree.unrelated.Rout' to 'test.pedigree.unrelated.Rout.save' ...14a15,21
> 
> Attaching package: 'Matrix'
> 
> The following object(s) are masked from 'package:base':
> 
>     det
> 
  Running 'twin.R'
  Comparing 'twin.Rout' to 'twin.Rout.save' ...3a4,10
> 
> Attaching package: 'Matrix'
> 
> The following object(s) are masked from 'package:base':
> 
>     det
> 
** running tests for arch 'x64' OK
  Running 'failure.R'
  Comparing 'failure.Rout' to 'failure.Rout.save' ...4a5,11
> 
> Attaching package: 'Matrix'
> 
> The following object(s) are masked from 'package:base':
> 
>     det
> 
  Running 'kin1.R'
  Comparing 'kin1.Rout' to 'kin1.Rout.save' ...6a7,13
> 
> Attaching package: 'Matrix'
> 
> The following object(s) are masked from 'package:base':
> 
>     det
> 
  Running 'makefam.R'
  Comparing 'makefam.Rout' to 'makefam.Rout.save' ...3a4,10
> 
> Attaching package: 'Matrix'
> 
> The following object(s) are masked from 'package:base':
> 
>     det
> 
  Running 'subscript.R'
  Comparing 'subscript.Rout' to 'subscript.Rout.save' ...6a7,13
> 
> Attaching package: 'Matrix'
> 
> The following object(s) are masked from 'package:base':
> 
>     det
> 
  Running 'test.pedigree.legend.R'
  Comparing 'test.pedigree.legend.Rout' to 'test.pedigree.legend.Rout.save' ...6a7,13
> 
> Attaching package: 'Matrix'
> 
> The following object(s) are masked from 'package:base':
> 
>     det
> 
  Running 'test.pedigree.shrink.R'
  Comparing 'test.pedigree.shrink.Rout' to 'test.pedigree.shrink.Rout.save' ...10a11,17
> 
> Attaching package: 'Matrix'
> 
> The following object(s) are masked from 'package:base':
> 
>     det
> 
  Running 'test.pedigree.trim.R'
  Comparing 'test.pedigree.trim.Rout' to 'test.pedigree.trim.Rout.save' ...3a4,10
> 
> Attaching package: 'Matrix'
> 
> The following object(s) are masked from 'package:base':
> 
>     det
> 
  Running 'test.pedigree.unrelated.R'
  Comparing 'test.pedigree.unrelated.Rout' to 'test.pedigree.unrelated.Rout.save' ...14a15,21
> 
> Attaching package: 'Matrix'
> 
> The following object(s) are masked from 'package:base':
> 
>     det
> 
  Running 'twin.R'
  Comparing 'twin.Rout' to 'twin.Rout.save' ...3a4,10
> 
> Attaching package: 'Matrix'
> 
> The following object(s) are masked from 'package:base':
> 
>     det
> 
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... OK
* checking re-building of vignette PDFs ... OK
* checking PDF version of manual ... OK
NOTE: There was 1 note.
See
  'd:/Rcompile/CRANpkg/local/2.15/kinship2.Rcheck/00check.log'
for details.