* using log directory 'd:/Rcompile/CRANpkg/local/2.15/lme4.Rcheck'
* using R version 2.15.0 (2012-03-30)
* using platform: x86_64-pc-mingw32 (64-bit)
* using session charset: ISO8859-1
* checking for file 'lme4/DESCRIPTION' ... OK
* this is package 'lme4' version '0.999375-42'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking whether package 'lme4' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
nlmer : <anonymous>: warning in assign(nm, env = env, mf[[nm]]):
  partial argument match of 'env' to 'envir'
nlmer : <anonymous>: warning in assign(nm, env = env,
  rep(start$fixef[[nm]], length.out = n)): partial argument match of
  'env' to 'envir'
printMer: warning in abbreviate(rn, minlen = 11): partial argument
  match of 'minlen' to 'minlength'
printMer: warning in matrix(format(round(corF@x, 3), nsmall = 3), nc =
  p, dimnames = list(rns, abbreviate(rn, minlen = 6))): partial
  argument match of 'nc' to 'ncol'
printMer: warning in abbreviate(rn, minlen = 6): partial argument match
  of 'minlen' to 'minlength'
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking for portable compilation flags in Makevars ... OK
* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
* checking compiled code ... OK
* checking sizes of PDF files under 'inst/doc' ... OK
* checking installed files from 'inst/doc' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
** running examples for arch 'x64' ... OK
* checking for unstated dependencies in tests ... OK
* checking tests ...
** running tests for arch 'i386' OK
  Running 'Gamma.R'
  Running 'drop.R'
  Running 'extras.R'
  Running 'lmer-1.R'
  Comparing 'lmer-1.Rout' to 'lmer-1.Rout.save' ...138c138
< 6   -1.7594785
---
> 6   -1.7594786
432c432
<  group    (Intercept) 140.641662 11.85924        
---
>  group    (Intercept) 140.641531 11.85924        
439c439
< (Intercept) 15.23545    8.40776   1.812
---
> (Intercept) 15.23552    8.40776   1.812
458c458
< [1,]  7.18679062
---
> [1,]  7.18678711
466c466
< [1] 87.58735
---
> [1] 87.58733
472c472
<     1     0   300   900     4 
---
>     1     0   300   900     5 
476,477c476,477
< (Intercept) 15.2354454
< x            0.1855864
---
> (Intercept) 15.2355231
> x            0.1855856
484,487c484,487
< [1,] -8.35043172
< [2,]  8.35043172
< [3,]  0.08457406
< [4,] -0.08457406
---
> [1,] -8.35048135
> [2,]  8.35048135
> [3,]  0.08457456
> [4,] -0.08457456
  Running 'lmer-conv.R'
  Running 'lmer.R'
  Running 'nlmer-conv.R'
  Running 'nlmer.R'
  Comparing 'nlmer.Rout' to 'nlmer.Rout.save' ...6d5
< > ## TODO: nicer version of this is in  system.file("test-tools.R", package = "Matrix")
30c29
<           lKa  0.227356 0.47682     NaN        
---
>           lKa  0.227357 0.47682     NaN        
32c31
<  Residual      0.591717 0.76923                
---
>  Residual      0.591716 0.76923                
38,39c37,38
< lKa  0.47414    0.15287    3.10
< lCl -3.23550    0.05235  -61.80
---
> lKa  0.47414    0.15288    3.10
> lCl -3.23551    0.05235  -61.80
58c57
<  Subject  lKa  0.227492 0.47696 
---
>  Subject  lKa  0.227493 0.47696 
60c59
<  Residual      0.591691 0.76921 
---
>  Residual      0.591689 0.76921 
67c66
< lCl -3.23538    0.05236  -61.79
---
> lCl -3.23539    0.05236  -61.79
  Running 'simulate.R'
** running tests for arch 'x64' OK
  Running 'Gamma.R'
  Running 'drop.R'
  Running 'extras.R'
  Running 'lmer-1.R'
  Comparing 'lmer-1.Rout' to 'lmer-1.Rout.save' ... OK
  Running 'lmer-conv.R'
  Running 'lmer.R'
  Running 'nlmer-conv.R'
  Running 'nlmer.R'
  Comparing 'nlmer.Rout' to 'nlmer.Rout.save' ...6d5
< > ## TODO: nicer version of this is in  system.file("test-tools.R", package = "Matrix")
30c29
<           lKa  0.227361 0.47682     NaN        
---
>           lKa  0.227357 0.47682     NaN        
32c31
<  Residual      0.591715 0.76923                
---
>  Residual      0.591716 0.76923                
39c38
< lCl -3.23550    0.05235  -61.80
---
> lCl -3.23551    0.05235  -61.80
58c57
<  Subject  lKa  0.227496 0.47697 
---
>  Subject  lKa  0.227493 0.47696 
66c65
< lKa  0.47409    0.15291    3.10
---
> lKa  0.47408    0.15291    3.10
  Running 'simulate.R'
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... OK
* checking re-building of vignette PDFs ... OK
* checking PDF version of manual ... OK
NOTE: There was 1 note.
See
  'd:/Rcompile/CRANpkg/local/2.15/lme4.Rcheck/00check.log'
for details.