* using log directory 'd:/Rcompile/CRANpkg/local/2.15/marginTree.Rcheck'
* using R version 2.15.0 (2012-03-30)
* using platform: x86_64-pc-mingw32 (64-bit)
* using session charset: ISO8859-1
* checking for file 'marginTree/DESCRIPTION' ... OK
* this is package 'marginTree' version '1.01'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking whether package 'marginTree' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
marginTree.plotcv: warning in axis(3, at = cv.obj$threshold, lab =
  paste(cv.obj$size), srt = 90, adj = 0): partial argument match of
  'lab' to 'labels'
marginTree.predict: no visible binding for '<<-' assignment to 'nbetas'
marginTree.predict: no visible binding for global variable 'a'
mypredict: no visible binding for '<<-' assignment to 'nbetas'
mypredict: no visible binding for global variable 'nbetas'
* checking Rd files ... NOTE
prepare_Rd: marginTree.plclust.Rd:23-24: Dropping empty section \value
prepare_Rd: marginTree.plotcv.Rd:21-22: Dropping empty section \value
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... NOTE
S3 methods shown with full name in documentation object 'marginTree-internal':
  'print.marginTree' 'print.marginTreecv' 'print.marginTreegetnonzero'
  'summary.marginTreegetnonzero'

The \usage entries for S3 methods should use the \method markup and not
their full name.
See the chapter 'Writing R documentation files' in the 'Writing R
Extensions' manual.
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
** running examples for arch 'x64' ... OK
* checking PDF version of manual ... OK
NOTE: There were 3 notes.
See
  'd:/Rcompile/CRANpkg/local/2.15/marginTree.Rcheck/00check.log'
for details.