* using log directory 'd:/Rcompile/CRANpkg/local/2.15/mkin.Rcheck'
* using R version 2.15.0 (2012-03-30)
* using platform: x86_64-pc-mingw32 (64-bit)
* using session charset: ISO8859-1
* checking for file 'mkin/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'mkin' version '0.8-11'
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... NOTE
As from R 2.14.0 all packages need a namespace.
One will be generated on installation, but it is better to handcraft a
NAMESPACE file: R CMD build will produce a suitable starting point.
CRAN requires a NAMESPACE file for all submissions.
* checking whether package 'mkin' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
mkin_long_to_wide: no visible binding for global variable 'name'
mkin_long_to_wide: no visible binding for global variable 'value'
mkinfit: no visible binding for global variable 'name'
mkinfit : cost: no visible binding for global variable 'name'
mkinfit : cost: no visible binding for global variable 'value'
mkinfit: no visible binding for global variable 'out_transformed_plot'
mkinplot: no visible binding for global variable 'type'
mkinplot: no visible binding for global variable 'variable'
mkinplot: no visible binding for global variable 'observed'
mkinresplot: no visible binding for global variable 'variable'
mkinresplot: no visible binding for global variable 'residual'
mkinstart: no visible binding for global variable 'name'
print.summary.mkinfit: warning in printCoefmat(x$par[, c(1, 2, 4)],
  cs.in = c(1, 2), tst.ind = integer(0), P.values = TRUE, has.Pvalue =
  TRUE, digits = digits, ...): partial argument match of 'cs.in' to
  'cs.ind'
* checking Rd files ... NOTE
prepare_Rd: mkinstart.Rd:26-28: Dropping empty section \details
prepare_Rd: mkinstart.Rd:35-37: Dropping empty section \examples
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking sizes of PDF files under 'inst/doc' ... OK
* checking installed files from 'inst/doc' ... NOTE
The following files should probably not be installed:
  'header.tex'

Consider the use of a .Rinstignore file: see 'Writing R Extensions',
or move the vignette sources from 'inst/doc' to 'vignettes'.
* checking examples ...
** running examples for arch 'i386' ... OK
** running examples for arch 'x64' ... OK
* checking for unstated dependencies in tests ... OK
* checking tests ...
** running tests for arch 'i386' OK
  Running 'doRUnit.R'
** running tests for arch 'x64' OK
  Running 'doRUnit.R'
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... OK
* checking re-building of vignette PDFs ... OK
* checking PDF version of manual ... OK
NOTE: There were 4 notes.
See
  'd:/Rcompile/CRANpkg/local/2.15/mkin.Rcheck/00check.log'
for details.