* using log directory 'd:/Rcompile/CRANpkg/local/2.15/mlmRev.Rcheck' * using R version 2.15.0 (2012-03-30) * using platform: x86_64-pc-mingw32 (64-bit) * using session charset: ISO8859-1 * checking for file 'mlmRev/DESCRIPTION' ... OK * this is package 'mlmRev' version '1.0-1' * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking whether package 'mlmRev' can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking for portable file names ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking index information ... OK * checking package subdirectories ... OK * loading checks for arch 'i386' ** checking whether the package can be loaded ... OK ** checking whether the package can be loaded with stated dependencies ... OK ** checking whether the package can be unloaded cleanly ... OK ** checking whether the namespace can be loaded with stated dependencies ... OK ** checking whether the namespace can be unloaded cleanly ... OK * loading checks for arch 'x64' ** checking whether the package can be loaded ... OK ** checking whether the package can be loaded with stated dependencies ... OK ** checking whether the package can be unloaded cleanly ... OK ** checking whether the namespace can be loaded with stated dependencies ... OK ** checking whether the namespace can be unloaded cleanly ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of 'data' directory ... OK * checking data for non-ASCII characters ... OK * checking data for ASCII and uncompressed saves ... OK * checking sizes of PDF files under 'inst/doc' ... OK * checking installed files from 'inst/doc' ... NOTE The following files should probably not be installed: 'myVignette.sty' Consider the use of a .Rinstignore file: see 'Writing R Extensions', or move the vignette sources from 'inst/doc' to 'vignettes'. * checking examples ... ** running examples for arch 'i386' ... OK ** running examples for arch 'x64' ... OK * checking for unstated dependencies in tests ... OK * checking tests ... ** running tests for arch 'i386' OK Running 'guImmun.R' Comparing 'guImmun.Rout' to 'guImmun.Rout.save' ...5,10d4 < Attaching package: 'lme4' < < The following object(s) are masked from 'package:stats': < < AIC, BIC < 32,33c26,27 < mom25pY -0.1284 0.1543 -0.83 0.4054 < ord23 -0.1385 0.1609 -0.86 0.3893 --- > mom25pY -0.1284 0.1543 -0.83 0.4055 > ord23 -0.1385 0.1609 -0.86 0.3892 35,37c29,31 < ord7p 0.2893 0.2483 1.17 0.2440 < ethnN -0.1132 0.3125 -0.36 0.7173 < ethnS -0.0348 0.2322 -0.15 0.8810 --- > ord7p 0.2893 0.2483 1.16 0.2440 > ethnN -0.1131 0.3125 -0.36 0.7173 > ethnS -0.0347 0.2322 -0.15 0.8810 44,45c38,39 < ruralY -0.6494 0.1985 -3.27 0.0011 ** < pcInd81 -0.8574 0.3257 -2.63 0.0085 ** --- > ruralY -0.6493 0.1985 -3.27 0.0011 ** > pcInd81 -0.8572 0.3257 -2.63 0.0085 ** 87,92c81,86 < mom25pY -0.1360 0.1537 -0.88 0.37645 < ord23 -0.1374 0.1605 -0.86 0.39168 < ord46 0.1556 0.1977 0.79 0.43142 < ord7p 0.2404 0.2464 0.98 0.32909 < ethnN -0.2206 0.3095 -0.71 0.47605 < ethnS -0.0784 0.2311 -0.34 0.73443 --- > mom25pY -0.1359 0.1537 -0.88 0.37652 > ord23 -0.1375 0.1605 -0.86 0.39166 > ord46 0.1556 0.1977 0.79 0.43148 > ord7p 0.2404 0.2464 0.98 0.32913 > ethnN -0.2206 0.3095 -0.71 0.47600 > ethnS -0.0784 0.2311 -0.34 0.73438 94,95c88,89 < momEdS 0.3876 0.2766 1.40 0.16113 < momWorkY 0.2721 0.1283 2.12 0.03389 * --- > momEdS 0.3876 0.2766 1.40 0.16115 > momWorkY 0.2721 0.1283 2.12 0.03390 * 97c91 < pcInd81 -0.8354 0.3251 -2.57 0.01017 * --- > pcInd81 -0.8354 0.3251 -2.57 0.01018 * 111c105 < mom (Intercept) 1.2410 1.1140 --- > mom (Intercept) 1.2411 1.1140 117c111 < (Intercept) -0.6971 0.2687 -2.59 0.00948 ** --- > (Intercept) -0.6971 0.2687 -2.59 0.00947 ** 119,121c113,115 < mom25pY 0.0258 0.1163 0.22 0.82417 < ethnN -0.2172 0.3068 -0.71 0.47894 < ethnS -0.0812 0.2293 -0.35 0.72324 --- > mom25pY 0.0258 0.1163 0.22 0.82405 > ethnN -0.2172 0.3068 -0.71 0.47896 > ethnS -0.0812 0.2294 -0.35 0.72324 123c117 < momEdS 0.3266 0.2708 1.21 0.22783 --- > momEdS 0.3266 0.2708 1.21 0.22778 126c120 < pcInd81 -0.8367 0.3220 -2.60 0.00937 ** --- > pcInd81 -0.8366 0.3220 -2.60 0.00938 ** Running 'lmerTest.R' Comparing 'lmerTest.Rout' to 'lmerTest.Rout.save' ...6,11d5 < Attaching package: 'lme4' < < The following object(s) are masked from 'package:stats': < < AIC, BIC < 171c165 < fm3 7 16519 16567 -8253 0.0 0 1 --- > fm3 7 16519 16567 -8253 0.0 0 <2e-16 212,213c206,207 < school (Intercept) 0.08583 0.293 < Residual 0.56253 0.750 --- > school (Intercept) 0.08583 0.2930 > Residual 0.56253 0.7500 297c291 < Subject (Intercept) 64.0346 8.0022 --- > Subject (Intercept) 64.0345 8.0022 354c348 < fm08 12 649.4 690.8 -312.7 0 0 <2e-16 --- > fm08 12 649.4 690.8 -312.7 1.68e-06 0 <2e-16 356c350 < + logLik(fm08, REML=FALSE), tol=1e-07)) --- > + logLik(fm08, REML=FALSE))) Running 'versions.R' ** running tests for arch 'x64' OK Running 'guImmun.R' Comparing 'guImmun.Rout' to 'guImmun.Rout.save' ...5,10d4 < Attaching package: 'lme4' < < The following object(s) are masked from 'package:stats': < < AIC, BIC < 32c26 < mom25pY -0.1284 0.1543 -0.83 0.4054 --- > mom25pY -0.1284 0.1543 -0.83 0.4055 36,37c30,31 < ethnN -0.1132 0.3125 -0.36 0.7173 < ethnS -0.0348 0.2322 -0.15 0.8810 --- > ethnN -0.1131 0.3125 -0.36 0.7173 > ethnS -0.0347 0.2322 -0.15 0.8810 42c36 < husEdU 0.0147 0.2296 0.06 0.9491 --- > husEdU 0.0146 0.2296 0.06 0.9492 45c39 < pcInd81 -0.8574 0.3257 -2.63 0.0085 ** --- > pcInd81 -0.8572 0.3257 -2.63 0.0085 ** 87,89c81,83 < mom25pY -0.1360 0.1537 -0.88 0.37650 < ord23 -0.1375 0.1605 -0.86 0.39165 < ord46 0.1556 0.1977 0.79 0.43147 --- > mom25pY -0.1359 0.1537 -0.88 0.37652 > ord23 -0.1375 0.1605 -0.86 0.39166 > ord46 0.1556 0.1977 0.79 0.43148 91,92c85,86 < ethnN -0.2206 0.3095 -0.71 0.47598 < ethnS -0.0784 0.2311 -0.34 0.73436 --- > ethnN -0.2206 0.3095 -0.71 0.47600 > ethnS -0.0784 0.2311 -0.34 0.73438 94,95c88,89 < momEdS 0.3876 0.2766 1.40 0.16112 < momWorkY 0.2721 0.1283 2.12 0.03391 * --- > momEdS 0.3876 0.2766 1.40 0.16115 > momWorkY 0.2721 0.1283 2.12 0.03390 * 97c91 < pcInd81 -0.8354 0.3251 -2.57 0.01017 * --- > pcInd81 -0.8354 0.3251 -2.57 0.01018 * 111c105 < mom (Intercept) 1.2410 1.1140 --- > mom (Intercept) 1.2411 1.1140 119,124c113,118 < mom25pY 0.0258 0.1163 0.22 0.82412 < ethnN -0.2172 0.3068 -0.71 0.47898 < ethnS -0.0812 0.2294 -0.35 0.72332 < momEdP 0.3339 0.1366 2.44 0.01451 * < momEdS 0.3266 0.2708 1.21 0.22777 < momWorkY 0.2538 0.1272 2.00 0.04591 * --- > mom25pY 0.0258 0.1163 0.22 0.82405 > ethnN -0.2172 0.3068 -0.71 0.47896 > ethnS -0.0812 0.2294 -0.35 0.72324 > momEdP 0.3339 0.1366 2.44 0.01453 * > momEdS 0.3266 0.2708 1.21 0.22778 > momWorkY 0.2538 0.1272 2.00 0.04592 * 162c156 < mom25pY 0.0259 0.1162 0.22 0.82334 --- > mom25pY 0.0259 0.1162 0.22 0.82333 Running 'lmerTest.R' Comparing 'lmerTest.Rout' to 'lmerTest.Rout.save' ...6,11d5 < Attaching package: 'lme4' < < The following object(s) are masked from 'package:stats': < < AIC, BIC < 52c46 < (Intercept) 40.7496 0.2881 141.4 --- > (Intercept) 40.7496 0.2881 141.5 54c48 < avg.IQ.ver.cen 1.4089 0.3238 4.4 --- > avg.IQ.ver.cen 1.4089 0.3237 4.4 171c165 < fm3 7 16519 16567 -8253 0.0 0 1 --- > fm3 7 16519 16567 -8253 0.0 0 <2e-16 212,213c206,207 < school (Intercept) 0.08583 0.293 < Residual 0.56253 0.750 --- > school (Intercept) 0.08583 0.2930 > Residual 0.56253 0.7500 241c235 < lea (Intercept) 0.01477 0.1215 --- > lea (Intercept) 0.01478 0.1216 297c291 < Subject (Intercept) 64.0353 8.0022 --- > Subject (Intercept) 64.0345 8.0022 326c320 < Subject (Intercept) 64.0348 8.0022 --- > Subject (Intercept) 64.0346 8.0022 354c348 < fm08 12 649.4 690.8 -312.7 0 0 1 --- > fm08 12 649.4 690.8 -312.7 1.68e-06 0 <2e-16 356c350 < + logLik(fm08, REML=FALSE), tol=1e-07)) --- > + logLik(fm08, REML=FALSE))) 364,372c358,366 < 1: 14869.350: 0.271130 0.0962178 < 2: 14869.120: 0.234541 0.0337752 < 3: 14868.448: 0.257104 0.0405373 < 4: 14868.361: 0.249361 0.0627829 < 5: 14868.329: 0.253833 0.0616933 < 6: 14868.328: 0.255792 0.0575286 < 7: 14868.326: 0.254891 0.0578339 < 8: 14868.325: 0.254282 0.0585646 < 9: 14868.325: 0.254614 0.0587515 --- > 1: 14869.350: 0.271130 0.0962183 > 2: 14869.120: 0.234540 0.0337758 > 3: 14868.448: 0.257104 0.0405381 > 4: 14868.361: 0.249359 0.0627845 > 5: 14868.329: 0.253832 0.0616944 > 6: 14868.328: 0.255792 0.0575285 > 7: 14868.326: 0.254891 0.0578338 > 8: 14868.325: 0.254282 0.0585648 > 9: 14868.325: 0.254614 0.0587516 374c368 < 11: 14868.325: 0.254509 0.0589166 --- > 11: 14868.325: 0.254509 0.0589167 437c431 < second (Intercept) 0.04637 0.2153 --- > second (Intercept) 0.04639 0.2154 439c433 < Residual 4.21852 2.0539 --- > Residual 4.21851 2.0539 444c438 < (Intercept) 5.92742 0.08660 68.4 --- > (Intercept) 5.92741 0.08660 68.4 Running 'versions.R' * checking for unstated dependencies in vignettes ... OK * checking package vignettes in 'inst/doc' ... OK * checking running R code from vignettes ... OK * checking re-building of vignette PDFs ... OK * checking PDF version of manual ... OK NOTE: There was 1 note. See 'd:/Rcompile/CRANpkg/local/2.15/mlmRev.Rcheck/00check.log' for details.