* using log directory 'd:/Rcompile/CRANpkg/local/2.15/msProcess.Rcheck'
* using R version 2.15.0 (2012-03-30)
* using platform: x86_64-pc-mingw32 (64-bit)
* using session charset: ISO8859-1
* checking for file 'msProcess/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'msProcess' version '1.0.6'
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... NOTE
As from R 2.14.0 all packages need a namespace.
One will be generated on installation, but it is better to handcraft a
NAMESPACE file: R CMD build will produce a suitable starting point.
CRAN requires a NAMESPACE file for all submissions.
* checking whether package 'msProcess' can be installed ... OK
* checking installed package size ... NOTE
  installed size is  5.9Mb
  sub-directories of 1Mb or more:
    data1   1.2Mb
    data2   1.2Mb
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
assignEvent: no visible binding for global variable 'newhist'
binblocks2SQLite: no visible global function definition for 'dbDriver'
binblocks2SQLite: no visible global function definition for 'dbConnect'
binblocks2SQLite: no visible global function definition for
  'dbExistsTable'
binblocks2SQLite: no visible global function definition for
  'dbRemoveTable'
binblocks2SQLite : <anonymous>: no visible global function definition
  for 'dbWriteTable'
binblocks2SQLite: no visible global function definition for
  'dbDisconnect'
cypherGenXML2Bin: no visible global function definition for
  'parseXMLPathFile'
cypherGenXMList2BinBlocks : <anonymous>: no visible global function
  definition for 'parseXMLPathFile'
cypherGenXMList2BinBlocks: no visible global function definition for
  'parseXMLPathFile'
importBin2Sqlite: no visible global function definition for 'dbDriver'
importBin2Sqlite: no visible global function definition for 'dbConnect'
importBin2Sqlite: no visible global function definition for
  'make.db.names.default'
importBin2Sqlite: no visible global function definition for
  'dbWriteTable'
importBin2Sqlite: no visible global function definition for
  'dbGetQuery'
importBin2Sqlite: no visible global function definition for
  'dbRemoveTable'
importBin2Sqlite: no visible global function definition for
  'dbDisconnect'
importXMLDir: no visible binding for global variable 'ErrorClass'
msAlignCluster: possible error in dist(logmz[peak.unique], metric =
  "euclidean"): unused argument(s) (metric = "euclidean")
msAlignMRD: warning in wavMODWT(peak.hist.smoothed, wavelet = "haar",
  n.level = level - 2): partial argument match of 'n.level' to
  'n.levels'
msAssign: possible error in assign(x, value, frame = envir): unused
  argument(s) (frame = envir)
msCalibrate: no visible global function definition for 'l1fit'
msCalibrate: no visible global function definition for 'rreg'
msGet: possible error in get(x, frame = envir): unused argument(s)
  (frame = envir)
msHelp: no visible global function definition for 'platform'
msHelp: no visible global function definition for 'attached.where'
msHelp: no visible global function definition for 'quoteSyntax'
msHelp: no visible global function definition for 'searchPaths'
msHelp: no visible global function definition for 'callBrowse'
msImport: no visible global function definition for 'base.path.name'
msImport: no visible global function definition for 'importData'
msImportCiphergenXML: no visible global function definition for
  'parseXMLPathFile'
msLaunchExample: no visible global function definition for 'guiOpen'
msObjects: possible error in objects(classes = "msSet"): unused
  argument(s) (classes = "msSet")
msPeakMRD: warning in wavMODWT(y, wavelet = "haar", n.level = n.level):
  partial argument match of 'n.level' to 'n.levels'
msPeakMRD: warning in wavMODWT(y, wavelet = "d4", n.level = n.level):
  partial argument match of 'n.level' to 'n.levels'
msPlot: no visible global function definition for 'regMatch'
msQualify: no visible global function definition for 'princompRob'
plot.msSet: warning in msPlot(matlines = z$matlines, matpoints =
  z$matpoints, abline = z$abline, text = z$text, main = main, xlab =
  xlab, ylab = "intensity", offset = offset, ...): partial argument
  match of 'matlines' to 'matlines.'
plot.msSet: warning in msPlot(matlines = z$matlines, matpoints =
  z$matpoints, abline = z$abline, text = z$text, main = main, xlab =
  xlab, ylab = "intensity", offset = offset, ...): partial argument
  match of 'matpoints' to 'matpoints.'
plot.msSet: warning in msPlot(matlines = z$matlines, matpoints =
  z$matpoints, abline = z$abline, text = z$text, main = main, xlab =
  xlab, ylab = "intensity", offset = offset, ...): partial argument
  match of 'abline' to 'abline.'
plot.msSet: warning in msPlot(matlines = z$matlines, matpoints =
  z$matpoints, abline = z$abline, text = z$text, main = main, xlab =
  xlab, ylab = "intensity", offset = offset, ...): partial argument
  match of 'text' to 'text.'
predict.msQualify: no visible global function definition for
  'predict.princomp'
throwEvent: no visible binding for global variable 'msProcessEnv'
writeBinBlocks: warning in dir(path, pattern = paste("^", pattern,
  "\\.[0-9]+$", sep = ""), full = TRUE): partial argument match of
  'full' to 'full.names'
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... WARNING
'::' or ':::' import not declared from: 'splus2R'
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking sizes of PDF files under 'inst/doc' ... OK
* checking installed files from 'inst/doc' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
** running examples for arch 'x64' ... OK
* checking PDF version of manual ... OK
WARNING: There was 1 warning.
NOTE: There were 3 notes.
See
  'd:/Rcompile/CRANpkg/local/2.15/msProcess.Rcheck/00check.log'
for details.