* using log directory 'd:/Rcompile/CRANpkg/local/2.15/multcomp.Rcheck' * using R version 2.15.0 (2012-03-30) * using platform: x86_64-pc-mingw32 (64-bit) * using session charset: ISO8859-1 * checking for file 'multcomp/DESCRIPTION' ... OK * this is package 'multcomp' version '1.2-12' * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking whether package 'multcomp' can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking for portable file names ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * loading checks for arch 'i386' ** checking whether the package can be loaded ... OK ** checking whether the package can be loaded with stated dependencies ... OK ** checking whether the package can be unloaded cleanly ... OK ** checking whether the namespace can be loaded with stated dependencies ... OK ** checking whether the namespace can be unloaded cleanly ... OK * loading checks for arch 'x64' ** checking whether the package can be loaded ... OK ** checking whether the package can be loaded with stated dependencies ... OK ** checking whether the package can be unloaded cleanly ... OK ** checking whether the namespace can be loaded with stated dependencies ... OK ** checking whether the namespace can be unloaded cleanly ... OK * checking for unstated dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of 'data' directory ... OK * checking data for non-ASCII characters ... OK * checking data for ASCII and uncompressed saves ... OK * checking sizes of PDF files under 'inst/doc' ... OK * checking installed files from 'inst/doc' ... OK * checking examples ... ** running examples for arch 'i386' ... OK ** checking differences from 'multcomp-Ex_i386.Rout' to 'multcomp-Ex.Rout.save' ... 280a281,288 > > Attaching package: 'Matrix' > > The following object(s) are masked from 'package:base': > > det > > Warning: replacing previous import 'diag' when loading 'Matrix' 445c453 < Quantile = 3.0633 --- > Quantile = 3.0638 451,460c459,468 < B - A == 0 -2.1333 -4.7921 0.5255 < C - A == 0 3.6000 0.9412 6.2588 < D - A == 0 2.2000 -0.4588 4.8588 < E - A == 0 -4.3333 -6.9921 -1.6745 < C - B == 0 5.7333 3.0745 8.3921 < D - B == 0 4.3333 1.6745 6.9921 < E - B == 0 -2.2000 -4.8588 0.4588 < D - C == 0 -1.4000 -4.0588 1.2588 < E - C == 0 -7.9333 -10.5921 -5.2745 < E - D == 0 -6.5333 -9.1921 -3.8745 --- > B - A == 0 -2.1333 -4.7925 0.5259 > C - A == 0 3.6000 0.9408 6.2592 > D - A == 0 2.2000 -0.4592 4.8592 > E - A == 0 -4.3333 -6.9925 -1.6741 > C - B == 0 5.7333 3.0741 8.3925 > D - B == 0 4.3333 1.6741 6.9925 > E - B == 0 -2.2000 -4.8592 0.4592 > D - C == 0 -1.4000 -4.0592 1.2592 > E - C == 0 -7.9333 -10.5925 -5.2741 > E - D == 0 -6.5333 -9.1925 -3.8741 526c534 < C - A == 0 3.6000 0.8679 4.148 0.00293 ** --- > C - A == 0 3.6000 0.8679 4.148 0.00275 ** 592,606c600,614 < PE4 - PE3 == 0 -0.012820 -0.114111 0.088472 < PE5 - PE3 == 0 -0.084398 -0.182358 0.013561 < PE6 - PE3 == 0 0.019286 -0.084213 0.122784 < PE7 - PE3 == 0 -0.010048 -0.120046 0.099951 < PE9 - PE3 == 0 0.075536 -0.028030 0.179102 < PE5 - PE4 == 0 -0.071579 -0.128780 -0.014378 < PE6 - PE4 == 0 0.032105 -0.034135 0.098346 < PE7 - PE4 == 0 0.002772 -0.073225 0.078769 < PE9 - PE4 == 0 0.088355 0.022009 0.154701 < PE6 - PE5 == 0 0.103684 0.042659 0.164709 < PE7 - PE5 == 0 0.074351 0.002854 0.145848 < PE9 - PE5 == 0 0.159934 0.098795 0.221073 < PE7 - PE6 == 0 -0.029333 -0.108248 0.049582 < PE9 - PE6 == 0 0.056250 -0.013419 0.125919 < PE9 - PE7 == 0 0.085583 0.006580 0.164587 --- > PE4 - PE3 == 0 -0.012820 -0.114108 0.088468 > PE5 - PE3 == 0 -0.084398 -0.182355 0.013558 > PE6 - PE3 == 0 0.019286 -0.084210 0.122781 > PE7 - PE3 == 0 -0.010048 -0.120043 0.099948 > PE9 - PE3 == 0 0.075536 -0.028027 0.179098 > PE5 - PE4 == 0 -0.071579 -0.128779 -0.014379 > PE6 - PE4 == 0 0.032105 -0.034133 0.098344 > PE7 - PE4 == 0 0.002772 -0.073223 0.078767 > PE9 - PE4 == 0 0.088355 0.022012 0.154699 > PE6 - PE5 == 0 0.103684 0.042661 0.164707 > PE7 - PE5 == 0 0.074351 0.002856 0.145845 > PE9 - PE5 == 0 0.159934 0.098797 0.221071 > PE7 - PE6 == 0 -0.029333 -0.108246 0.049579 > PE9 - PE6 == 0 0.056250 -0.013417 0.125917 > PE9 - PE7 == 0 0.085583 0.006582 0.164584 1132,1134c1140,1142 < V2 - V1 >= 0 -2.13330 -Inf 0.82293 < V3 - V1 >= 0 -7.46670 -Inf -4.51047 < V4 - V1 >= 0 -1.66670 -Inf -0.03581 --- > V2 - V1 >= 0 -2.13330 -Inf 0.82288 > V3 - V1 >= 0 -7.46670 -Inf -4.51052 > V4 - V1 >= 0 -1.66670 -Inf -0.03584 1238a1247,1253 > Attaching package: 'Matrix' > > The following object(s) are masked from 'package:base': > > det > > 1294,1296c1309,1311 < b1 - b0 >= 0 -2.13333 -Inf 0.82290 < b2 - b0 >= 0 -7.46667 -Inf -4.51043 < b3 - b0 >= 0 -1.66667 -Inf -0.03578 --- > b1 - b0 >= 0 -2.13333 -Inf 0.82285 > b2 - b0 >= 0 -7.46667 -Inf -4.51048 > b3 - b0 >= 0 -1.66667 -Inf -0.03581 1312c1327 < Quantile = 1.8428 --- > Quantile = 1.8429 1318,1320c1333,1335 < b1 - b0 >= 0 -2.13333 -Inf 0.82217 < b2 - b0 >= 0 -7.46667 -Inf -4.51117 < b3 - b0 >= 0 -1.66667 -Inf -0.03618 --- > b1 - b0 >= 0 -2.13333 -Inf 0.82222 > b2 - b0 >= 0 -7.46667 -Inf -4.51112 > b3 - b0 >= 0 -1.66667 -Inf -0.03616 OK ** running examples for arch 'x64' ... OK ** checking differences from 'multcomp-Ex_x64.Rout' to 'multcomp-Ex.Rout.save' ... 280a281,288 > > Attaching package: 'Matrix' > > The following object(s) are masked from 'package:base': > > det > > Warning: replacing previous import 'diag' when loading 'Matrix' 505c513 < D - B == 0 4.3333 0.8679 4.993 0.000531 *** --- > D - B == 0 4.3333 0.8679 4.993 0.000398 *** 938,939c946,947 < otrend >= 0 -3.4821 2.0867 -1.669 0.2185 < atrend >= 0 -314.7324 408.9901 -0.770 0.6625 --- > otrend >= 0 -3.4821 2.0867 -1.669 0.2182 > atrend >= 0 -314.7324 408.9901 -0.770 0.6621 1238a1247,1253 > Attaching package: 'Matrix' > > The following object(s) are masked from 'package:base': > > det > > OK * checking for unstated dependencies in tests ... OK * checking tests ... ** running tests for arch 'i386' OK Running 'bugfix.R' Comparing 'bugfix.Rout' to 'bugfix.Rout.save' ...124c124 < [1] 1.380852e-01 3.524764e-04 3.563710e-07 2.897682e-14 2.050268e-01 --- > [1] 1.380883e-01 3.524764e-04 9.394029e-07 2.897682e-14 2.050268e-01 127c127 < [1] 0.0001321268 --- > [1] 0.0001910665 Running 'regtest-Tukey.R' Comparing 'regtest-Tukey.Rout' to 'regtest-Tukey.Rout.save' ... OK Running 'regtest-anova.R' Comparing 'regtest-anova.Rout' to 'regtest-anova.Rout.save' ... OK Running 'regtest-interface.R' Comparing 'regtest-interface.Rout' to 'regtest-interface.Rout.save' ... OK Running 'regtest-lme.R' Comparing 'regtest-lme.Rout' to 'regtest-lme.Rout.save' ...11a12,18 > Attaching package: 'Matrix' > > The following object(s) are masked from 'package:base': > > det > > ** running tests for arch 'x64' OK Running 'bugfix.R' Comparing 'bugfix.Rout' to 'bugfix.Rout.save' ...124,125c124,125 < [1] 1.380883e-01 3.524764e-04 3.563710e-07 2.897682e-14 2.050268e-01 < [6] 9.917862e-04 6.540452e-10 2.512705e-01 3.447725e-06 3.042641e-03 --- > [1] 1.380883e-01 3.524764e-04 9.394029e-07 2.897682e-14 2.050268e-01 > [6] 9.917862e-04 6.540450e-10 2.512705e-01 3.447725e-06 3.042641e-03 163c163 < 2: In glht.matrix(model = list(coefficients = c(14.4166666666667, -5.83333333333334, : --- > 2: In glht.matrix(model = list(coefficients = c(14.4166666666667, -5.83333333333333, : 181c181 < 2: In glht.matrix(model = list(coefficients = c(14.4166666666667, -5.83333333333334, : --- > 2: In glht.matrix(model = list(coefficients = c(14.4166666666667, -5.83333333333333, : 202c202 < 2: In glht.matrix(model = list(coefficients = c(14.4166666666667, -5.83333333333334, : --- > 2: In glht.matrix(model = list(coefficients = c(14.4166666666667, -5.83333333333333, : Running 'regtest-Tukey.R' Comparing 'regtest-Tukey.Rout' to 'regtest-Tukey.Rout.save' ... OK Running 'regtest-anova.R' Comparing 'regtest-anova.Rout' to 'regtest-anova.Rout.save' ... OK Running 'regtest-interface.R' Comparing 'regtest-interface.Rout' to 'regtest-interface.Rout.save' ... OK Running 'regtest-lme.R' Comparing 'regtest-lme.Rout' to 'regtest-lme.Rout.save' ...11a12,18 > Attaching package: 'Matrix' > > The following object(s) are masked from 'package:base': > > det > > * checking for unstated dependencies in vignettes ... OK * checking package vignettes in 'inst/doc' ... OK * checking running R code from vignettes ... OK * checking re-building of vignette PDFs ... OK * checking PDF version of manual ... OK