* using log directory 'd:/Rcompile/CRANpkg/local/2.15/phylosim.Rcheck'
* using R version 2.15.0 (2012-03-30)
* using platform: x86_64-pc-mingw32 (64-bit)
* using session charset: ISO8859-1
* checking for file 'phylosim/DESCRIPTION' ... OK
* this is package 'phylosim' version '0.17'
* checking package namespace information ... OK
* checking package dependencies ... NOTE
Package suggested but not available for checking: 'multicore'
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking whether package 'phylosim' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking sizes of PDF files under 'inst/doc' ... OK
* checking installed files from 'inst/doc' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
** running examples for arch 'x64' ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... OK
* checking re-building of vignette PDFs ... NOTE
Error in re-building vignettes:
  ...
<use PhyloSim-048.pdf> [10] <PhyloSim-055.pdf, id=100, 13008.6pt x 2890.8pt>
<use PhyloSim-055.pdf> [11 <d:/RCompile/CRANpkg/local/2.15/phylosim.Rcheck/vign
_test/phylosim/inst/doc/PhyloSim-048.pdf>]
<PhyloSim-064.pdf, id=111, 433.62pt x 433.62pt> <use PhyloSim-064.pdf> [12 <d:/
RCompile/CRANpkg/local/2.15/phylosim.Rcheck/vign_test/phylosim/inst/doc/PhyloSi
m-055.pdf>] <PhyloSim-067.pdf, id=122, 13008.6pt x 5781.6pt>
<use PhyloSim-067.pdf> [13 <d:/RCompile/CRANpkg/local/2.15/phylosim.Rcheck/vign
_test/phylosim/inst/doc/PhyloSim-064.pdf>] [14 <d:/RCompile/CRANpkg/local/2.15/
phylosim.Rcheck/vign_test/phylosim/inst/doc/PhyloSim-067.pdf>]
<PhyloSim-076.pdf, id=145, 13008.6pt x 2890.8pt> <use PhyloSim-076.pdf>
[15 <d:/RCompile/CRANpkg/local/2.15/phylosim.Rcheck/vign_test/phylosim/inst/doc
/PhyloSim-076.pdf>] <PhyloSim-083.pdf, id=156, 433.62pt x 433.62pt>
<use PhyloSim-083.pdf> [16] <PhyloSim-086.pdf, id=161, 13008.6pt x 2890.8pt>
<use PhyloSim-086.pdf> [17 <d:/RCompile/CRANpkg/local/2.15/phylosim.Rcheck/vign
_test/phylosim/inst/doc/PhyloSim-083.pdf>] [18 <d:/RCompile/CRANpkg/local/2.15/
phylosim.Rcheck/vign_test/phylosim/inst/doc/PhyloSim-086.pdf>] [19]
!pdfTeX error: d:\compiler\texmf\miktex\bin\pdflatex.exe (file d:/RCompile/CRAN
pkg/local/2.15/phylosim.Rcheck/vign_test/phylosim/inst/doc/PhyloSim-096.pdf): P
DF inclusion: required page does not exist <0>
 ==> Fatal error occurred, no output PDF file produced!
make[1]: *** [all] Error 1
make[1]: Leaving directory `/cygdrive/d/RCompile/CRANpkg/local/2.15/phylosim.Rcheck/vign_test/phylosim/inst/doc'
Error in buildVignettes(dir = "d:/Rcompile/CRANpkg/local/2.15/phylosim.Rcheck/vign_test/phylosim") : 
  running 'make' failed
Execution halted

* checking PDF version of manual ... OK
NOTE: There were 2 notes.
See
  'd:/Rcompile/CRANpkg/local/2.15/phylosim.Rcheck/00check.log'
for details.