* using log directory 'd:/Rcompile/CRANpkg/local/2.15/picante.Rcheck'
* using R version 2.15.0 (2012-03-30)
* using platform: x86_64-pc-mingw32 (64-bit)
* using session charset: ISO8859-1
* checking for file 'picante/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'picante' version '1.3-0'
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... NOTE
As from R 2.14.0 all packages need a namespace.
One will be generated on installation, but it is better to handcraft a
NAMESPACE file: R CMD build will produce a suitable starting point.
CRAN requires a NAMESPACE file for all submissions.
* checking whether package 'picante' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
Kcalc: warning in vcv.phylo(phy, cor = TRUE): partial argument match of
  'cor' to 'corr'
pblm: warning in vcv.phylo(tree1, cor = TRUE): partial argument match
  of 'cor' to 'corr'
pblm: warning in vcv.phylo(tree2, cor = TRUE): partial argument match
  of 'cor' to 'corr'
pblmpredict: warning in vcv.phylo(tree1.w.novel, cor = TRUE): partial
  argument match of 'cor' to 'corr'
pblmpredict: warning in vcv.phylo(tree2.w.novel, cor = TRUE): partial
  argument match of 'cor' to 'corr'
pcd: warning in vcv.phylo(tree, cor = TRUE): partial argument match of
  'cor' to 'corr'
phylostruct: warning in randomizeMatrix(samp, null.model = null.model,
  it = it): partial argument match of 'it' to 'iterations'
psc: warning in vcv.phylo(tree, cor = TRUE): partial argument match of
  'cor' to 'corr'
pse: warning in vcv.phylo(tree, cor = TRUE): partial argument match of
  'cor' to 'corr'
psv: warning in vcv.phylo(tree, cor = TRUE): partial argument match of
  'cor' to 'corr'
psv.spp: warning in vcv.phylo(tree, cor = TRUE): partial argument match
  of 'cor' to 'corr'
sppregs: warning in vcv.phylo(tree, cor = TRUE): partial argument match
  of 'cor' to 'corr'
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
* checking compiled code ... OK
* checking sizes of PDF files under 'inst/doc' ... OK
* checking installed files from 'inst/doc' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
** running examples for arch 'x64' ... OK
* checking for unstated dependencies in vignettes ... NOTE
'library' or 'require' call not declared from: 'cluster'
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... WARNING
Errors in running code in vignettes:
when running code in 'picante-intro.Rnw'
  ...
clump2b 7.12500 7.62500                        
clump4  8.06250 7.62500 7.62500                
even    8.06250 8.06250 8.06250 7.87500        
random  7.81250 7.68750 7.93750 8.12500 8.03125

> library(cluster)

  When sourcing 'picante-intro.R':
Error: there is no package called 'cluster'
Execution halted

* checking re-building of vignette PDFs ... OK
* checking PDF version of manual ... OK
WARNING: There was 1 warning.
NOTE: There were 3 notes.
See
  'd:/Rcompile/CRANpkg/local/2.15/picante.Rcheck/00check.log'
for details.