* using log directory 'd:/Rcompile/CRANpkg/local/2.15/pmg.Rcheck' * using R version 2.15.0 (2012-03-30) * using platform: x86_64-pc-mingw32 (64-bit) * using session charset: ISO8859-1 * checking for file 'pmg/DESCRIPTION' ... OK * this is package 'pmg' version '0.9-42' * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking whether package 'pmg' can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking for portable file names ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * loading checks for arch 'i386' ** checking whether the package can be loaded ... OK ** checking whether the package can be loaded with stated dependencies ... OK ** checking whether the package can be unloaded cleanly ... OK ** checking whether the namespace can be loaded with stated dependencies ... OK ** checking whether the namespace can be unloaded cleanly ... OK * loading checks for arch 'x64' ** checking whether the package can be loaded ... OK ** checking whether the package can be loaded with stated dependencies ... OK ** checking whether the package can be unloaded cleanly ... OK ** checking whether the namespace can be loaded with stated dependencies ... OK ** checking whether the namespace can be unloaded cleanly ... OK * checking for unstated dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... NOTE File 'pmg/R/zzz.R': .onLoad calls: cat("Loading pmg()\n") Package startup functions should use 'packageStartupMessage' to generate messages. See section 'Good practice' in ?.onAttach. .editDFProperties : : no visible binding for global variable 'getType' .editDFProperties : : warning in ggroup(horizontal = FALSE, cont = container, expand = TRUE): partial argument match of 'cont' to 'container' .editDFProperties : : warning in glabel(gettext("Edit names and column types"), cont = g): partial argument match of 'cont' to 'container' .editDFProperties : : warning in glayout(cont = g, expand = TRUE): partial argument match of 'cont' to 'container' .editDFProperties : : warning in ggroup(cont = tbl): partial argument match of 'cont' to 'container' .editDFProperties : : warning in gdroplist(names(.$df), cont = .$columnDroplistGroup): partial argument match of 'cont' to 'container' .editDFProperties : : warning in gdroplist(.$allTypes, cont = tbl): partial argument match of 'cont' to 'container' .editDFProperties : : warning in gedit(names(.$df)[1], cont = tbl): partial argument match of 'cont' to 'container' .editDFProperties : : warning in gseparator(cont = g): partial argument match of 'cont' to 'container' .editDFProperties : : warning in ggroup(cont = g, expand = TRUE): partial argument match of 'cont' to 'container' .editDFProperties : : warning in gdf(head(.$df), cont = .$dfGroup, expand = TRUE): partial argument match of 'cont' to 'container' .editDFProperties : : warning in ggroup(cont = g): partial argument match of 'cont' to 'container' .editDFProperties : : warning in glabel("Save data frame as", cont = bg): partial argument match of 'cont' to 'container' .editDFProperties : : warning in gedit(.$dfname, cont = bg): partial argument match of 'cont' to 'container' .editDFProperties : : updateDF: warning in gdf(head(.$df), cont = .$dfGroup, expand = TRUE): partial argument match of 'cont' to 'container' .newSet : setISetByName: no visible global function definition for 'iset.list' .newSet : setISetByName: no visible global function definition for 'iset.set' .newSet: no visible global function definition for 'iset.list' .newSet: no visible global function definition for 'iset.set' .newSet: no visible global function definition for 'iset.new' .newSet: no visible global function definition for 'iset.df' .newSet: warning in gimage("rarrow", dir = "stock"): partial argument match of 'dir' to 'dirname' .newSet: warning in gimage("uarrow", dir = "stock"): partial argument match of 'dir' to 'dirname' .newSet: warning in gimage("larrow", dir = "stock"): partial argument match of 'dir' to 'dirname' .newSet: warning in gpanedgroup(lgroup, rgroup, cont = container): partial argument match of 'cont' to 'container' .newSet: warning in ggroup(horizontal = FALSE, cont = plotGroup): partial argument match of 'cont' to 'container' .newSet: warning in ggroup(cont = selGroup): partial argument match of 'cont' to 'container' .newSet : : no visible global function definition for 'ibox' .newSet : : no visible global function definition for 'imosaic' .newSet : : no visible global function definition for 'ipcp' .newSet : : no visible global function definition for 'iset.selected' .newSet : : no visible global function definition for 'iset.select' .newSet : : no visible global function definition for 'iplot.cur' .newSet : : no visible global function definition for 'iplot.list' .newSet : : no visible global function definition for 'iplot.set' .newSet : : warning in ggroup(horizontal = FALSE, cont = win, raise.on.dragmotion = TRUE): partial argument match of 'cont' to 'container' .newSet : : warning in gframe("Add trend line", horizontal = FALSE, cont = gp): partial argument match of 'cont' to 'container' .newSet : : warning in glabel("x=", cont = varGroup): partial argument match of 'cont' to 'container' .newSet : : warning in glabel("x-variable", cont = varGroup, editable = TRUE): partial argument match of 'cont' to 'container' .newSet : : warning in glabel(", ", cont = varGroup): partial argument match of 'cont' to 'container' .newSet : : warning in glabel("y=", cont = varGroup): partial argument match of 'cont' to 'container' .newSet : : warning in glabel("y-variable", cont = varGroup, editable = TRUE): partial argument match of 'cont' to 'container' .newSet : : warning in gcheckbox("consider selected values only", cont = spframe): partial argument match of 'cont' to 'container' .newSet : : warning in ggroup(cont = gp): partial argument match of 'cont' to 'container' .newSet : : warning in gbutton("Add regression line", cont = bgroup, handler = function(h, ...) {: partial argument match of 'cont' to 'container' .newSet : : warning in addTrendLine("lm"): partial argument match of 'cont' to 'container' .newSet : : warning in }): partial argument match of 'cont' to 'container' .newSet : : warning in gbutton("Add lowess line", cont = bgroup, handler = function(h, ...) {: partial argument match of 'cont' to 'container' .newSet : : warning in addTrendLine("lowess"): partial argument match of 'cont' to 'container' .newSet : : addTrendLine: no visible global function definition for 'iset.selected' .newSet : : addTrendLine: no visible global function definition for 'iabline' .newSet : : addTrendLine: no visible global function definition for 'ilines' .newSet : : warning in gframe("Specify line to add", cont = gp): partial argument match of 'cont' to 'container' .newSet : : warning in gedit("", cont = slgp): partial argument match of 'cont' to 'container' .newSet : : warning in gbutton("add", cont = slgp, handler = function(h, ...) {: partial argument match of 'cont' to 'container' .newSet : : warning in eval(parse(text = paste("ilines(", svalue(addThese), ")")), envir = df): partial argument match of 'cont' to 'container' .newSet : : warning in gbutton("cancel", cont = delGroup, handler = function(h, ...) dispose(win)): partial argument match of 'cont' to 'container' .newSet : : no visible global function definition for 'iobj.rm' .newSet : : no visible global function definition for 'iobj.cur' .newSet : : no visible global function definition for '.jstrVal' .newSet : getCurrentPlotNameType: no visible global function definition for 'iplot.list' .newSet : getCurrentPlotNameType: no visible global function definition for 'iplot.cur' checkForUpdatesGUI: warning in ggroup(horizontal = FALSE, cont = win): partial argument match of 'cont' to 'container' checkForUpdatesGUI: warning in glabel(".-.-.-", cont = g, expand = TRUE): partial argument match of 'cont' to 'container' checkForUpdatesGUI: warning in gstatusbar("Checking for updates", cont = g): partial argument match of 'cont' to 'container' constructionOfNormal : updatePlot: no visible binding for global variable 'x' constructionOfNormal: warning in ggroup(cont = container): partial argument match of 'cont' to 'container' dLatticeExplorer: warning in glabel("aspect=", cont = latticeOptionsGroup): partial argument match of 'cont' to 'container' dLatticeExplorer: warning in gdroplist(c("fill", "xy", "iso"), editable = TRUE, cont = latticeOptionsGroup, handler = function(...) updatedLatticeExplorer(obj)): partial argument match of 'cont' to 'container' dLatticeExplorer: warning in gseparator(horizontal = FALSE, cont = latticeOptionsGroup): partial argument match of 'cont' to 'container' dLatticeExplorer: warning in glabel("type=", cont = latticeOptionsGroup): partial argument match of 'cont' to 'container' dLatticeExplorer: warning in gcheckboxgroup(c("p", "l", "a", "o"), horizontal = TRUE, cont = latticeOptionsGroup, handler = function(...) updatedLatticeExplorer(obj)): partial argument match of 'cont' to 'container' dLatticeExplorer: warning in glabel("col=", cont = latticeOptionsGroup): partial argument match of 'cont' to 'container' dLatticeExplorer: warning in gdroplist(c("", "black", "red", "blue", "green", "brown", "yellow"), cont = latticeOptionsGroup, handler = function(...) updatedLatticeExplorer(obj)): partial argument match of 'cont' to 'container' dpqrfuncs: warning in ggroup(cont = gp): partial argument match of 'cont' to 'container' dpqrfuncs: warning in gbutton("ok", cont = bgp): partial argument match of 'cont' to 'container' dpqrfuncs: warning in gbutton("help", cont = bgp): partial argument match of 'cont' to 'container' getAllPackages: warning in .packages(all = TRUE): partial argument match of 'all' to 'all.available' getCranSiteIfNeeded: warning in ggroup(horizontal = FALSE, cont = NULL): partial argument match of 'cont' to 'container' getCranSiteIfNeeded: warning in glabel("Select a site\nthen click 'OK'", cont = g): partial argument match of 'cont' to 'container' histogramAndDensity : addDensity: no visible binding for global variable 'x' histogramAndDensity: warning in ggroup(cont = container): partial argument match of 'cont' to 'container' importFile : : warning in ggroup(horizontal = FALSE, cont = .$container): partial argument match of 'cont' to 'container' importFile : : warning in glabel(sprintf("Read %s", basename(.$filename)), cont = g): partial argument match of 'cont' to 'container' importFile : : warning in glayout(cont = g): partial argument match of 'cont' to 'container' importFile : : warning in gedit("X", cont = tbl): partial argument match of 'cont' to 'container' importFile : : warning in gframe(gettext("Import"), cont = g): partial argument match of 'cont' to 'container' importFile : : warning in glayout(cont = f): partial argument match of 'cont' to 'container' importFile : : warning in gdroplist(c(TRUE, FALSE), cont = tbl): partial argument match of 'cont' to 'container' importFile : : warning in gspinbutton(0, 1000, cont = tbl): partial argument match of 'cont' to 'container' importFile : : warning in gdroplist(c(FALSE, TRUE), cont = tbl): partial argument match of 'cont' to 'container' importFile : : warning in gframe(gettext("Attributes"), cont = g): partial argument match of 'cont' to 'container' importFile : : warning in gedit(sep, cont = tbl): partial argument match of 'cont' to 'container' importFile : : warning in gedit("\"", cont = tbl): partial argument match of 'cont' to 'container' importFile : : warning in gdroplist(c(".", ","), cont = tbl): partial argument match of 'cont' to 'container' importFile : : warning in gedit("#", cont = tbl): partial argument match of 'cont' to 'container' importFile : : warning in gedit("NA", cont = tbl): partial argument match of 'cont' to 'container' importFile : : makePreview: warning in ggroup(horizontal = FALSE, cont = .$og, expand = TRUE): partial argument match of 'cont' to 'container' importFile : : makePreview: warning in gdf(df, cont = .$ig): partial argument match of 'cont' to 'container' importFile : : warning in gframe(gettext("preview"), cont = g, expand = TRUE): partial argument match of 'cont' to 'container' importFile : : warning in ggroup(cont = f, expand = TRUE): partial argument match of 'cont' to 'container' importFile : : warning in ggroup(cont = .$og, expand = TRUE): partial argument match of 'cont' to 'container' importFile : : warning in glabel(paste(gettext("Read"), basename(.$filename), collapse = " "), cont = g): partial argument match of 'cont' to 'container' importFile : : warning in gframe(gettext("Field widths"), cont = g): partial argument match of 'cont' to 'container' importFile : : warning in gedit(paste("c(", nchar(readLines(.$filename, n = 1)), ")", collapse = ""), coerce.with = svalue, cont = tbl): partial argument match of 'cont' to 'container' importFile : : warning in glabel(paste(gettext("Read"), basename(.$filename), gettext("as"), popchar(fileType), collapse = " "), cont = g): partial argument match of 'cont' to 'container' importFile : : warning in gedit(fmls[[i]], cont = tbl, coerce.with = paste("as.", class(fmls[[i]]), sep = "", collapse = "")): partial argument match of 'cont' to 'container' lsDatasets: no visible global function definition for '.GlobalEnv' lsFunctions: no visible global function definition for '.GlobalEnv' lsModels: no visible global function definition for '.GlobalEnv' lsTs: no visible global function definition for '.GlobalEnv' pmg: no visible binding for global variable 'pmg.user.menu' pmg: no visible binding for global variable 'pmg.menubar' pmg.castGUI: warning in ggroup(horizontal = FALSE, cont = container, raise.on.dragmotion = TRUE): partial argument match of 'cont' to 'container' pmg.castGUI: warning in glabel("Cast a melted data set", cont = g): partial argument match of 'cont' to 'container' pmg.castGUI: warning in glayout(cont = g): partial argument match of 'cont' to 'container' pmg.castGUI: warning in gexpandgroup("Preview", cont = g): partial argument match of 'cont' to 'container' pmg.castGUI: warning in ggroup(cont = g): partial argument match of 'cont' to 'container' pmg.castGUI: warning in gbutton("Save output as:", cont = saveAsGroup): partial argument match of 'cont' to 'container' pmg.castGUI: warning in gedit("", cont = saveAsGroup): partial argument match of 'cont' to 'container' pmg.edit.dataframe.properties.dialog: warning in ggroup(horizontal = FALSE, cont = container): partial argument match of 'cont' to 'container' pmg.edit.dataframe.properties.dialog: warning in glayout(cont = g): partial argument match of 'cont' to 'container' pmg.iplots: warning in gtoolbar(tbl, cont = group): partial argument match of 'cont' to 'container' pmg.iplots : addNewDF: warning in ggroup(horizontal = FALSE, cont = win): partial argument match of 'cont' to 'container' pmg.meltGUI: warning in ggroup(horizontal = FALSE, cont = container, raise.on.dragmotion = TRUE): partial argument match of 'cont' to 'container' pmg.meltGUI: warning in glabel("Melt a data frame", cont = g): partial argument match of 'cont' to 'container' pmg.meltGUI: warning in glayout(cont = g): partial argument match of 'cont' to 'container' pmg.meltGUI: warning in gexpandgroup("Preview", cont = g): partial argument match of 'cont' to 'container' pmg.meltGUI: warning in ggroup(cont = g): partial argument match of 'cont' to 'container' pmg.meltGUI: warning in gbutton("Save output as:", cont = saveAsGroup): partial argument match of 'cont' to 'container' pmg.meltGUI: warning in gedit("", cont = saveAsGroup): partial argument match of 'cont' to 'container' pmg.specifyFileForImport : : warning in ggroup(horizontal = FALSE, cont = container): partial argument match of 'cont' to 'container' pmg.specifyFileForImport : : warning in glayout(cont = g): partial argument match of 'cont' to 'container' pmg.specifyFileForImport : : warning in glabel(gettext("or"), cont = tbl): partial argument match of 'cont' to 'container' pmg.specifyFileForImport : : warning in gseparator(cont = tbl): partial argument match of 'cont' to 'container' pmg.specifyFileForImport : : warning in gdroplist(c(.$useDefaultText, sapply(names(filterList), popchar)), cont = tbl): partial argument match of 'cont' to 'container' pmg.teachingDemos : : no visible binding for global variable 'x' pmg.teachingDemos : : no visible binding for '<<-' assignment to '.binomialDemo.results' pmg.teachingDemos : : no visible binding for global variable '.binomialDemo.results' pmg.teachingDemos: warning in gstatusbar(gettext("Select a demo from the menubar above"), cont = group): partial argument match of 'cont' to 'container' probabilityCalculator : updatePlot: no visible binding for global variable 'x' probabilityCalculator: warning in ggroup(cont = container): partial argument match of 'cont' to 'container' qplotGUI: warning in gnotebook(cont = container, tab.pos = 1, ...): partial argument match of 'cont' to 'container' qplotGUI: warning in ggroup(horizontal = FALSE, cont = nb, label = "qplot"): partial argument match of 'cont' to 'container' qplotGUI: warning in ggroup(horizontal = FALSE, cont = nb, label = "plot args"): partial argument match of 'cont' to 'container' qplotGUI: warning in glayout(cont = qpg): partial argument match of 'cont' to 'container' qplotGUI: warning in gdroplist(c(), editable = TRUE, cont = tbl): partial argument match of 'cont' to 'container' qplotGUI: warning in gedit("", cont = tbl): partial argument match of 'cont' to 'container' qplotGUI: warning in gseparator(cont = tbl): partial argument match of 'cont' to 'container' qplotGUI: warning in gtable(geomVals1d, multiple = TRUE, cont = tbl): partial argument match of 'cont' to 'container' qplotGUI: warning in gnotebook(tab.pos = 3, cont = tbl): partial argument match of 'cont' to 'container' qplotGUI: warning in ggroup(horizontal = TRUE, cont = tbl): partial argument match of 'cont' to 'container' qplotGUI: warning in gdroplist(".", editable = TRUE, cont = fgp): partial argument match of 'cont' to 'container' qplotGUI: warning in glabel("~", cont = fgp): partial argument match of 'cont' to 'container' qplotGUI: warning in gbutton("edit", cont = fgp, handler = function(h, ...) {: partial argument match of 'cont' to 'container' qplotGUI: warning in if (svalue(widgets[["data"]]) != "") {: partial argument match of 'cont' to 'container' qplotGUI: warning in gWidgets:::editFormulaDialog(data = widgets[["data"]], responsewidget = widgets[["fresp"]], predictorwidget = widgets[["fpred"]]): partial argument match of 'cont' to 'container' qplotGUI: warning in }: partial argument match of 'cont' to 'container' qplotGUI: warning in else {: partial argument match of 'cont' to 'container' qplotGUI: warning in cat("Data is empty, facet needs to have a data frame set\n"): partial argument match of 'cont' to 'container' qplotGUI: warning in }): partial argument match of 'cont' to 'container' qplotGUI: warning in glayout(cont = parg): partial argument match of 'cont' to 'container' qplotGUI: warning in gdroplist(c("", "x", "y", "xy"), cont = tbl): partial argument match of 'cont' to 'container' qplotGUI: warning in gdroplist(c("", TRUE, "'grand_row'", "'grand_col'"), editable = TRUE, cont = tbl): partial argument match of 'cont' to 'container' qplotGUI : updateExtraArgs: warning in ggroup(horizontal = FALSE, cont = anb, label = i): partial argument match of 'cont' to 'container' qplotGUI : updateExtraArgs: warning in glabel("Using lm method", cont = eg): partial argument match of 'cont' to 'container' qplotGUI : updateExtraArgs: warning in ggroup(cont = eg): partial argument match of 'cont' to 'container' qplotGUI : updateExtraArgs: warning in glabel("formula", cont = tmp): partial argument match of 'cont' to 'container' qplotGUI : updateExtraArgs: warning in gdroplist(c("", "y ~ ns(x,1)", "y ~ ns(x,2)", "y ~ ns(x,3)"), coerce.with = function(str) {: partial argument match of 'cont' to 'container' qplotGUI : updateExtraArgs: warning in if (str == "") : partial argument match of 'cont' to 'container' qplotGUI : updateExtraArgs: warning in return(str): partial argument match of 'cont' to 'container' qplotGUI : updateExtraArgs: warning in else return(formula(str)): partial argument match of 'cont' to 'container' qplotGUI : updateExtraArgs: warning in }, handler = updateGraphic, editable = TRUE, cont = tmp): partial argument match of 'cont' to 'container' qplotGUI : updateExtraArgs: warning in glabel("quantile", cont = tmp): partial argument match of 'cont' to 'container' qplotGUI : updateExtraArgs: warning in gdroplist(c("", "seq(.05,.95,by=.05)", "seq(.10,.90,by=.10)", "seq(.25,.75,by=.25)"), coerce.with = function(str) {: partial argument match of 'cont' to 'container' qplotGUI : updateExtraArgs: warning in ifelse(str == "", "", try(eval(parse(text = str)), silent = TRUE)): partial argument match of 'cont' to 'container' qplotGUI : updateExtraArgs: warning in glabel("binwidth", cont = tmp): partial argument match of 'cont' to 'container' qplotGUI : updateExtraArgs: warning in gedit("", cont = tmp, coerce.with = as.numeric, handler = updateGraphic): partial argument match of 'cont' to 'container' qplotGUI : updateExtraArgs: warning in ifelse(str == "", "", formula(str)): partial argument match of 'cont' to 'container' repeatTrialsGUI: warning in gframe("Repeat trials", cont = container): partial argument match of 'cont' to 'container' repeatTrialsGUI: warning in glayout(cont = g): partial argument match of 'cont' to 'container' repeatTrialsGUI: warning in gedit("", cont = tbl): partial argument match of 'cont' to 'container' repeatTrialsGUI: warning in gedit(10, cont = tbl, coerce.with = as.numeric): partial argument match of 'cont' to 'container' repeatTrialsGUI: warning in gseparator(cont = tbl): partial argument match of 'cont' to 'container' repeatTrialsGUI: warning in gdroplist(actions, editable = TRUE, cont = tbl): partial argument match of 'cont' to 'container' repeatTrialsGUI: warning in ggroup(cont = tbl): partial argument match of 'cont' to 'container' repeatTrialsGUI: warning in gbutton("Repeat trials", cont = bg): partial argument match of 'cont' to 'container' repeatTrialsGUI: warning in gbutton("help", cont = bg, handler = function(h, ...) {: partial argument match of 'cont' to 'container' repeatTrialsGUI: warning in ghelp("repeatTrials", package = "pmg", container = pmgWC$new("repeatTrials", width = 400, height = 250)): partial argument match of 'cont' to 'container' repeatTrialsGUI: warning in }): partial argument match of 'cont' to 'container' summarized.t.test: warning in pt(tstat, df, lower = FALSE): partial argument match of 'lower' to 'lower.tail' * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking sizes of PDF files under 'inst/doc' ... OK * checking installed files from 'inst/doc' ... OK * checking examples ... ** running examples for arch 'i386' ... OK ** running examples for arch 'x64' ... OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes in 'inst/doc' ... OK * checking running R code from vignettes ... OK * checking re-building of vignette PDFs ... OK * checking PDF version of manual ... OK NOTE: There was 1 note. See 'd:/Rcompile/CRANpkg/local/2.15/pmg.Rcheck/00check.log' for details.