* using log directory 'd:/Rcompile/CRANpkg/local/2.14/MASS.Rcheck' * using R version 2.14.2 (2012-02-29) * using platform: i386-pc-mingw32 (32-bit) * using session charset: ISO8859-1 * checking for file 'MASS/DESCRIPTION' ... OK * this is package 'MASS' version '7.3-18' * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking whether package 'MASS' can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking for portable file names ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * loading checks for arch 'i386' ** checking whether the package can be loaded ... OK ** checking whether the package can be loaded with stated dependencies ... OK ** checking whether the package can be unloaded cleanly ... OK ** checking whether the namespace can be loaded with stated dependencies ... OK ** checking whether the namespace can be unloaded cleanly ... OK * loading checks for arch 'x64' ** checking whether the package can be loaded ... OK ** checking whether the package can be loaded with stated dependencies ... OK ** checking whether the package can be unloaded cleanly ... OK ** checking whether the namespace can be loaded with stated dependencies ... OK ** checking whether the namespace can be unloaded cleanly ... OK * checking for unstated dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of 'data' directory ... OK * checking data for non-ASCII characters ... OK * checking data for ASCII and uncompressed saves ... OK * checking line endings in C/C++/Fortran sources/headers ... OK * checking line endings in Makefiles ... OK * checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK * checking compiled code ... OK * checking examples ... ** running examples for arch 'i386' ... OK ** checking differences from 'MASS-Ex_i386.Rout' to 'MASS-Ex.Rout.save' ... 872c872 < -2.42080779 -0.61510520 -0.03573836 0.81641138 2.15153498 --- > -2.42080780 -0.61510520 -0.03573836 0.81641138 2.15153499 1530c1530 < factor(subject)2 -3.021e-15 2.828e-01 0.000 1.000000 --- > factor(subject)2 -4.271e-15 2.828e-01 0.000 1.000000 2383c2383 < ContHigh -2.159e-16 1.690e-01 0.000 1.000000 --- > ContHigh -1.490e-15 1.690e-01 0.000 1.000000 3232c3232 < -3.631e+01 7.292e-01 4.167e-01 6.030e-18 --- > -3.631e+01 7.292e-01 4.167e-01 -8.131e-17 3396c3396 < 0.07776401 3.08304824 3.30137838 3.44562531 2.80464433 --- > 0.07776401 3.08304824 3.30137838 3.44562531 2.80464434 3398c3398 < 2.60835015 3.03357724 3.52301734 3.38711844 3.46709395 --- > 2.60835015 3.03357725 3.52301734 3.38711844 3.46709396 3400c3400 < 3.81438456 3.73878664 3.51332580 3.39741114 3.47088607 --- > 3.81438456 3.73878664 3.51332581 3.39741115 3.47088608 3402c3402 < 3.72895847 3.31863862 3.37938672 2.96452195 3.58468686 --- > 3.72895847 3.31863862 3.37938673 2.96452195 3.58468686 3404c3404 < 3.39628029 3.36998871 -2.96015461 --- > 3.39628029 3.36998872 -2.96015460 3427c3427 < Achieved convergence tolerance: 4.889e-06 --- > Achieved convergence tolerance: 4.923e-06 3567c3567 < (Intercept) 2.7870650 (Intr) --- > (Intercept) 2.7870651 (Intr) 3569c3569 < Residual 6.2483880 --- > Residual 6.2483879 3589c3589 < -4.05938661 -0.63108408 0.06551865 0.71786439 2.79454034 --- > -4.05938661 -0.63108408 0.06551865 0.71786438 2.79454034 3636c3636 < N:K 1 33.1 33.13 2.146 0.16865 --- > N:K 1 33.1 33.14 2.146 0.16865 3695c3695 < 54.02 57.45 60.77 50.12 50.52 56.35 --- > 54.03 57.45 60.77 50.12 50.52 56.35 3743c3743 < Nf 3 20020 6674 37.686 2.46e-12 *** --- > Nf 3 20020 6673 37.686 2.46e-12 *** 3761c3761 < Nf 3 20020 6674 37.686 2.46e-12 *** --- > Nf 3 20020 6673 37.686 2.46e-12 *** 3795c3795 < 104.50 109.79 97.62 --- > 104.50 109.79 97.63 5182c5182 < Achieved convergence tolerance: 4.354e-06 --- > Achieved convergence tolerance: 4.39e-06 OK ** running examples for arch 'x64' ... OK ** checking differences from 'MASS-Ex_x64.Rout' to 'MASS-Ex.Rout.save' ... 1530c1530 < factor(subject)2 -2.300e-15 2.828e-01 0.000 1.000000 --- > factor(subject)2 -4.271e-15 2.828e-01 0.000 1.000000 3396c3396 < 0.07776401 3.08304824 3.30137838 3.44562531 2.80464433 --- > 0.07776401 3.08304824 3.30137838 3.44562531 2.80464434 3398c3398 < 2.60835015 3.03357724 3.52301734 3.38711844 3.46709395 --- > 2.60835015 3.03357725 3.52301734 3.38711844 3.46709396 3404c3404 < 3.39628029 3.36998871 -2.96015460 --- > 3.39628029 3.36998872 -2.96015460 3427c3427 < Achieved convergence tolerance: 4.92e-06 --- > Achieved convergence tolerance: 4.923e-06 5182c5182 < Achieved convergence tolerance: 4.324e-06 --- > Achieved convergence tolerance: 4.39e-06 OK * checking for unstated dependencies in tests ... OK * checking tests ... ** running tests for arch 'i386' OK Running 'confint.R' Running 'fitdistr.R' Comparing 'fitdistr.Rout' to 'fitdistr.Rout.save' ... OK Running 'glm.nb.R' Running 'hubers.R' Running 'lme.R' Running 'polr.R' Running 'profile.R' Running 'regression.R' Comparing 'regression.Rout' to 'regression.Rout.save' ... OK Running 'rlm.R' Running 'scripts.R' ** running tests for arch 'x64' OK Running 'confint.R' Running 'fitdistr.R' Comparing 'fitdistr.Rout' to 'fitdistr.Rout.save' ... OK Running 'glm.nb.R' Running 'hubers.R' Running 'lme.R' Running 'polr.R' Running 'profile.R' Running 'regression.R' Comparing 'regression.Rout' to 'regression.Rout.save' ... OK Running 'rlm.R' Running 'scripts.R' * checking PDF version of manual ... OK