* using log directory 'd:/Rcompile/CRANpkg/local/2.14/MSToolkit.Rcheck' * using R version 2.14.2 (2012-02-29) * using platform: i386-pc-mingw32 (32-bit) * using session charset: ISO8859-1 * checking for file 'MSToolkit/DESCRIPTION' ... OK * checking extension type ... Package * this is package 'MSToolkit' version '2.0' * checking package namespace information ... OK * checking package dependencies ... NOTE Package suggested but not available for checking: 'Rlsf' * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking whether package 'MSToolkit' can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking for portable file names ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking for unstated dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... NOTE File 'MSToolkit/R/zzz.R': .onAttach calls: cat(copyright, sep = "\n") cat("#########################################################\n") cat("# Unit tests #\n") cat("# > mstoolkitUnitTests( ) #\n") cat("##########################################################\n") cat("################################################################################\n") cat("# You are running the package from a grid node. To take advantage of it, use #\n") cat("# the grid argument in ?analyzeData #\n") cat("################################################################################\n") Package startup functions should use 'packageStartupMessage' to generate messages. See section 'Good practice' in ?.onAttach. analyzeData: no visible binding for global variable 'lsf.job.status' createContinuousCovariates: no visible binding for global variable 'nSubjects' createDiscreteCovariates: no visible binding for global variable 'nSubjects' createExternalCovariates: no visible binding for global variable 'nSubjects' createExternalParameters: no visible binding for global variable 'nSubjects' createInterims: no visible binding for global variable 'nSubjects' createNormalParameters: no visible binding for global variable 'nSubjects' createResponse: no visible global function definition for 'ectdstop' mstoolkitUnitTests: no visible binding for global variable 'unitTestPath' mstoolkitUnitTests: no visible binding for global variable 'systemTestPath' validNames : : no visible binding for global variable '..nm' * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking examples ... OK * checking for unstated dependencies in tests ... OK * checking tests ... OK Running 'doRUnit.R' * checking PDF version of manual ... OK