* using log directory 'd:/Rcompile/CRANpkg/local/2.14/RobLoxBioC.Rcheck'
* using R version 2.14.2 (2012-02-29)
* using platform: i386-pc-mingw32 (32-bit)
* using session charset: ISO8859-1
* checking for file 'RobLoxBioC/DESCRIPTION' ... OK
* this is package 'RobLoxBioC' version '0.8.2'
* package encoding: latin1
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking whether package 'RobLoxBioC' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking R/sysdata.rda ... OK
* checking examples ... OK
* checking differences from 'RobLoxBioC-Ex.Rout' to 'RobLoxBioC-Ex.Rout.save' ...
9c9,16
< Welcome to beadarray version 2.4.2
---
> 
> Attaching package: 'reshape'
> 
> The following object(s) are masked from 'package:plyr':
> 
>     rename, round_any
> 
> Welcome to beadarray version 2.4.1
11c18,25
< :startupmsg>  Utilities for start-up messages (version 0.7.2)
---
> 
> Attaching package: 'beadarray'
> 
> The following object(s) are masked from 'package:plyr':
> 
>     summarize
> 
> :startupmsg>  Utilities for start-up messages (version 0.7.3)
18c32
< :SweaveListingUtils>  0.5.5)
---
> :SweaveListingUtils>  0.5.4)
44c58
< :distr>  2.3.3)
---
> :distr>  2.3.4)
83c97
< :distrEx>  Extensions of package distr (version 2.3.1)
---
> :distrEx>  Extensions of package distr (version 2.3.2)
111c125
< :distrMod>  (version 2.3.1)
---
> :distrMod>  (version 2.3.3)
217,218c231,232
<  [1] 0.1642185 0.1567706 0.1571387 0.1609188 0.1617499 0.1607157 0.1382646
<  [8] 0.1471997 0.1693088 0.1836652 0.1787724 0.1601283 0.1728984 0.1519412
---
>  [1] 0.1755693 0.1567648 0.1571403 0.1609188 0.1617499 0.1607157 0.1382646
>  [8] 0.1471997 0.1693088 0.1836652 0.1787724 0.1601283 0.1729001 0.1519412
339c353
<    7.27    0.31    7.62 
---
>   5.597   0.044   5.660 
349c363
< > concentrations <- as.numeric(colnames(SpikeIn))
---
> > concentrations <- as.numeric(sampleNames(SpikeIn))
 OK
* checking PDF version of manual ... OK